BAC Information

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BAC

Clone NameMSMg01-294C03
Chromosome7 (Build37)
Map Location 122,598,041 - 122,598,234
singlet/doubletsinglet
Overlap genenone
Upstream genePde3b, Cyp2r1, Calca, LOC100043295, Calcb, Insc, EG627967, LOC668472
Downstream geneSox6, LOC100042779, 1110006G14Rik, EG668479, LOC100043313, 1110004F10Rik, Plekha7, Rps13, Pik3c2a, LOC100042798
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-294C03.T7 (MSMg01no294_c03.b1)MSMg01-294C03.TJ (MSMg01no294_c03.g1)
ACCAG422385AG422386
length739740
length of high quality
(start - end)
---194 (122 - 315)
definitionCHROMAT_FILE: MSMg01no294_c03.b1 PHD_FILE: MSMg01no294_c03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:29:44 2005CHROMAT_FILE: MSMg01no294_c03.g1 PHD_FILE: MSMg01no294_c03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:29:44 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXAAAATCTTTCTGCAGACCTGAGCAGGCCTGAGCACTC
CCAGTATCAGTTTTCCTCAGGAAGCAATGGAGGAGCTAGCGGGCATGGGA
AGTAGCCACAGCGTGCAGCAGGCAGAAGGAAAGCTAGGTTTGGCTGGCTC
TGGGGCCAGCACTTGGCTGTCACTTGGCTGGCTTGGAAGGAAATAGGACT
TAAGGACTTTTATTTTGGGGTGGTCCTGTCGATGGACTCCAGGGCTTTGT
GCTCTTCCATTGAACCTTTTTTGTGAAGACTGGCGTCTTTAGAAGCTTGA
AGAGTTTTGAATGGCTCCCCGGCGCCCCGCCCCACAGCTGCCCCACAAAT
GGACAAAGTTCCCCCCCCGAAAANCCATNTAAAAACCTGGGGCGGGGGCC
TCTGTGCATACCTGTGGGGAATTATCTTGTGTTACGTGAGATGCCAATAT
GCACCCACTGTGAGTAGAGCCAGTTTGTGCTGGAGGCGGCTAGATTGTAG
AAAACGGCGGATTGTATGAGAAAGGTGACCATGGGCCCACTGATCTTTGC
TTTTTGACTGTGCGCACTAAGCGACCAGTATTCCCTAAGGTCAGCTGCCC
CCACTATTCTGCCCTGATGGACCCTTGAACTGCGAATCAAACCTTTTCCC
TCATTTCGGCTCTGTGCCCGCTGCTGTGAGCAACTCCGCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no294_c03.g1 MSMg01no294_c03.g1 CHROMAT_FILE:
MSMg01no294_c03.g1 PHD_FILE: MSMg01no294_c03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:29:44 2005
         (194 letters)



>mm_chr7_122597841_122598434
          Length = 594

 Score =  368 bits (190), Expect = e-106
 Identities = 193/194 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aagcaatggaggagctagcgggcatgggaagtagccacagcgtgcagcaggcagaaggaa 60
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 aagcaatggaggagctagagggcatgggaagtagccacagcgtgcagcaggcagaaggaa 335

                                                                       
Query: 61  agctaggtttggctggctctggggccagcacttggctgtcacttggctggcttggaagga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 agctaggtttggctggctctggggccagcacttggctgtcacttggctggcttggaagga 275

                                                                       
Query: 121 aataggacttaaggacttttattttggggtggtcctgtcgatggactccagggctttgtg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 aataggacttaaggacttttattttggggtggtcctgtcgatggactccagggctttgtg 215

                         
Query: 181 ctcttccattgaac 194
           ||||||||||||||
Sbjct: 214 ctcttccattgaac 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 194
Length of database: 594
Length adjustment: 8
Effective length of query: 186
Effective length of database: 586
Effective search space:   108996
Effective search space used:   108996
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)