BAC Information

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BAC

Clone NameMSMg01-294D14
Chromosome7 (Build37)
Map Location 82,132,434 - 82,132,725
singlet/doubletsinglet
Overlap genenone
Upstream geneSt8sia2, LOC100042127, LOC100042140, LOC546979, Slco3a1, EG665308, EG665641, 0610006L08Rik
Downstream geneSv2b, 1500012K07Rik, LOC100042171, Akap13, Klhl25, LOC100042210
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-294D14.T7 (MSMg01no294_d14.b1)MSMg01-294D14.TJ (MSMg01no294_d14.g1)
ACCAG422453AG422454
length725731
length of high quality
(start - end)
317 (50 - 366)301 (81 - 381)
definitionCHROMAT_FILE: MSMg01no294_d14.b1 PHD_FILE: MSMg01no294_d14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:29:51 2005CHROMAT_FILE: MSMg01no294_d14.g1 PHD_FILE: MSMg01no294_d14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:29:52 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NAACTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCACTCTCCTTCTCCTCCTTCTACTTCTCCTCCTTCTCCTCCA
CCTTCCTCCCCCTCTTCCCCTTCCTCCCCCTCTTCCCCTTCCTCTTCCTC
CCCTTCCTCCTCCTCCCCTCTACTTCCTCCTCTCCTCCCCTACCTCCTCC
TCCCCTCCTCCCCCTTTTTGTCTTTTTCCTCCTCCTCCTTCATTTTGATA
ATATTTGTTAGGGAGGAAGAATTATTTAGATTTTAATTTAATTTTTTAAC
GTATTCACTTGACATCCTGCTCACTGCTCCCCTTCTGATCACCCCACTCC
CACAATCCTTTCTCATTTTCTTGCTTCTCCTCTCACCGGGTGGGGCCCCT
GGACATCCCCATACCCTGGGACTTCAAGTCACTGTGAGACTAGGCAGGTA
GGGAAGAAAATTCTTAAACCTCAGTTTTCTCATGTTATCTGCTCTCCTCA
CCATGGGGATGGCTAAGTGAAAGTCTTGCATAAGTTTTTGATGCTTAGTG
GGGACTTCAGTTGCCAGCCTTATCACTCTTCCTTTCTCTCCTTTGTTTTT
AAATAACACATGTGACACTTAGGAAAGTTCCTCCTTCCAGCAGACTATGG
AAGACTCATTTACTTGCTTCTATTGCTCTGTGAAAGGCATATAAGCCTAG
AGTAGTGATCCATGGAGGTTCCCAC
NAAACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCCCCAATGAATACCAGG
CCAAGGACTAATATACTGGTCCAAAAACTCCAGGCTCTGGCCATGAGGTA
AACAATTCTCTGTTTATGTTCCCACTCCATCACTAGGCATGGAAACATTT
GGGGGCTAAGTCCAGGGCAGATAAGCATCTGCTTTTCCCACTCCTCACTT
ACAGATCTTCTAGAAGTGTTCCTTCAGCCAATCACATAAGTATTTCTATT
CAAGACATTGCTCCTAGAGAGCCTCACTTTGATCTGTCTTCCAGAAGGTT
TGAACCAAGGACAAAATCATATTTTTGCACACTGCACACAATTCATGAAT
CTTCATGTGTAAAGTTATAAATGCCACTGAAAACACCCCTACCCATCACA
CACATAGAAAAAGAGAGAGACAGAGAGAGAGAGAGAGAAAGAGAGAGAGA
GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAATACACA
AACAAAATAAATGAGGAGGCAGGACGGCAGGACTGAATTGTGCCCATTCT
TGTGGAATATGGGTAAAAACAAGAAAGGTTTGTTGTTCTTTGTTTGGTTT
TGTTGTTGCTGTTGCTGATGTTGTTGCTGTTGCCGTTGCCCCCATTGTTG
TTGCTGTTTAATTTAGAATCCTTAACCACTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no294_d14.g1 MSMg01no294_d14.g1 CHROMAT_FILE:
MSMg01no294_d14.g1 PHD_FILE: MSMg01no294_d14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:29:52 2005
         (301 letters)



>mm_chr7_82132234_82132934
          Length = 701

 Score =  520 bits (269), Expect = e-152
 Identities = 287/293 (97%), Gaps = 2/293 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttccccaatgaataccaggccaaggactaatatactggtccaaaaac-tccaggctctg 59
           |||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct: 201 tttccccaatgaataccaggccaaggactaatatactggtccaaaaacctc-aggctctg 259

                                                                       
Query: 60  gccatgaggtaaacaattctctgtttatgttcccactccatcactaggcatggaaacatt 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 gccatgaggtaaacaattctctgtttatgttcccactccatcactaggcatggaaacatt 319

                                                                       
Query: 120 tgggggctaagtccagggcagataagcatctgcttttcccactcctcacttacagatctt 179
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 320 tgggggctaagttcagggcagataagcatctgcttttcccactcctcacttacagatttt 379

                                                                       
Query: 180 ctagaagtgttccttcagccaatcacataagtatttctattcaagacattgctcctagag 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 ctagaagtgttccttcagccaatcacataagtatttctattcaagacattgctcctagag 439

                                                                
Query: 240 agcctcactttgatctgtcttccagaaggtttgaaccaaggacaaaatcatat 292
           || ||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 440 agtctcactttgatctgtcttccagaaggtttgagccaaggacaaaatcatat 492


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 301
Length of database: 701
Length adjustment: 9
Effective length of query: 292
Effective length of database: 692
Effective search space:   202064
Effective search space used:   202064
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)