BAC Information

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BAC

Clone NameMSMg01-294D18
Chromosome7 (Build37)
Map Location 148,031,679 - 148,031,991
singlet/doubletsinglet
Overlap geneScgb1c1
Upstream geneGpr123, LOC244229, Kndc1, Utf1, LOC100039095, 6430531B16Rik, Adam8, Tubgcp2, Zfp511, Msx3, Drd1ip, Prap1, 1810014F10Rik, Echs1, Paox, Mtg1, Sprn, Olfr522, Olfr523, Olfr524, E430002D04Rik, 5830411N06Rik, EG622335, Olfr525, Olfr527, GA_x5J8B7W72BC-152913-152037, Olfr60, GA_x5J8B7W72BC-125691-125311, Olfr530, LOC622973, Olfr531, Olfr532, Olfr533, Olfr534-ps1, Olfr535, Olfr536, Olfr537-ps1, Olfr1523-ps1, Olfr538, Olfr1553-ps1, Olfr46, Olfr61, Olfr53, Olfr539, GA_x5J8B7W3EKE-4574231-4574913, Olfr45, Olfr541, GA_x5J8B7W3EKE-4522784-4521912, Cyp2e1, Syce1, LOC100043529, BC066028, 1190003J15Rik
Downstream geneOdf3, Bet1l, Ric8, Sirt3, Psmd13, LOC100043546, Cox8b, Nlrp6, Athl1, Ifitm5, Ifitm2, Ifitm1, LOC665143, Ifitm3, Ifitm6, B4galnt4, Pkp3, Sigirr, Trp53i5, Ptdss2, Rnh1, LOC546015, Hras1, Lrrc56, 1600016N20Rik, Rassf7, AA673488, Irf7, Mucdhl, Sct, Drd4, Deaf1, Tmem80, Eps8l2, B230206H07Rik, Taldo1, LOC100043585, Pddc1, Cend1, Slc25a22, Lrdd, Rplp2, Pnpla2, Efcab4a, Cd151, Polr2l, Tspan4, Chid1, Ap2a2, Muc6, LOC100039649, Muc2, Muc5ac, Muc5b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-294D18.T7 (MSMg01no294_d18.b1)MSMg01-294D18.TJ (MSMg01no294_d18.g1)
ACCAG422461AG422462
length739740
length of high quality
(start - end)		318 (48 - 365)292 (79 - 370)
definitionCHROMAT_FILE: MSMg01no294_d18.b1 PHD_FILE: MSMg01no294_d18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:29:52 2005CHROMAT_FILE: MSMg01no294_d18.g1 PHD_FILE: MSMg01no294_d18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:29:52 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCCATGAAAAACTCATTGTCATCCTCTGCTCTAGTCAGCCCTGTG
TTGCAAAGGGGATACAATGCCTAGGCAGGGACTTGATCTCCTGTCCTTGT
CTTTCTAGCACTCCCAGGTCAACCTGCAGATCCCTTCCCCATCACCACTA
GTGGGAGCTGCTGTGGTTTTCCCCCTGACTTCCTGACCTCACCAGGGAAG
AGAAGGGGGAGTTCTTCCCCTGGGCTAACTGGATCCAGAGGGTCAGGTCA
AACTGGATTGCTCCAGGGTGGGCGGCATTGGCCTCAGTGGTTAGTTAGTG
TTAGGTCAGGGTGTTTTTTTATACACACCCCCCCCACAGATTTCCTGCAC
TTAGGGGGTGGGGTCTGTGACACTGGTAAGAAAAGAACACCTGATCCGGG
GGAGGGGGGCCTCTTGGGGCCCCTTACCTACCAAAAGTGCTAGAAACAAG
GCCCAGACTTACCACAGATGCAGAGCAGGCTTAGGGCCACCAGTAGAAGA
GCGCTGCTTCCTTTCATGGTGACAGTCACAAGAACTGCTTGTGGGATACC
AGGCTTTTATGCTGTAGAAGGTGGCACCTTGCCCGGAGGCGGGGCATACC
TCTCAGGACCTGGCAGGACAACTGGGCCAGGCATGTCACTGTGCTCCATT
AGGTGCCAAGAAGTGCCAAACTTGATTGCATCATATGGG

CACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXACGCAGTTGAATCCTTCTCAAC
AGTCTGTTTTACGGGAACCTTCATTACCATAACCCGCAGTTCTGGTTCCG
GAATGAGGGATCTTCCTTGCGCCGGTGGTGGTAACCGTCCCAGGTTTTCT
TGTATTTTCTCGTCCCGGATTTTCTCGTCCCGGATTCTCGGCACCAACTC
TTAAACGCGTTCTCACGACCGGCCAGGAAGAACACAACAAACCAGAATCT
TCTGCGGCAAAACTTTATTGCTTACATCTTCAGGAGCAGGAGAGCAAGCC
CCCAAGCCCAAAAACGATTTTTTCTCCGCTTACATCTTTAGGAGCCAGAG
CGCCAGCGCGCCAGAGCGCAAAAGCGCAAGAGCACAAACAAGAGAGAGAA
TGGCGGAAACCCCGTCCCCTTTTAAGGAGAATTATCCTTCGCCTAGGACG
CATCACTCCCTGATTGGCTGCAGCCCATGGCCGAGTTGCACGTCACGGGA
AAGGCAGAGTACATGTAGTGGAAATACTCTTGGCACATGCGCAGATTATT
TGTTTACCACTTAGAACACAGGATGTCAGCGCCATCTTGTGACGGCGAAT
GTGGGGGCGGCTCCCAACATCAGTGAGTACATACCATATGTGTTCTTTTG
TGTCTGGGTTACCTTAGGATGATATTTTCTAGTCCCATCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no294_d18.b1 MSMg01no294_d18.b1 CHROMAT_FILE:
MSMg01no294_d18.b1 PHD_FILE: MSMg01no294_d18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:29:52 2005
         (318 letters)



>mm_chr7_148031476_148032193
          Length = 718

 Score =  567 bits (293), Expect = e-166
 Identities = 308/313 (98%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattccatgaaaaactcattgtcatcctctgctctagtcagccctgtgttgcaaaggg 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 ggaattccatgaaaaactcattgtcatcctctgctctagtcagccctgtgttgcaaaggg 457

                                                                       
Query: 64  gatacaatgcctaggcagggacttgatctcctgtccttgtctttctagcactcccaggtc 123
           ||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 gatacaatgccgagggagggacttgatctcctgtccttgtctttctagcactcccaggtc 397

                                                                       
Query: 124 aacctgcagatcccttccccatcaccactagtgggagctgctgtggttttccccctgact 183
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 396 aacctgcagatcccttccccatcaccactagtgggagctgctgtggtttcccccctgact 337

                                                                       
Query: 184 tcctgacctcaccagggaagagaagggggagttcttcccctgggctaactggatccagag 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 tcctgacctcaccagggaagagaagggggagttcttcccctgggctaactggatccagag 277

                                                                       
Query: 244 ggtcaggtcaaactggattgctccagggtgggcggcattggcctcagtggttagttagtg 303
           ||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 276 ggtcaggtcaaaccggattgctccagggtgggcggcattggcctcggtggttagttagtg 217

                        
Query: 304 ttaggtcagggtg 316
           |||||||||||||
Sbjct: 216 ttaggtcagggtg 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 318
Length of database: 718
Length adjustment: 9
Effective length of query: 309
Effective length of database: 709
Effective search space:   219081
Effective search space used:   219081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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