BAC Information

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BAC

Clone NameMSMg01-294K24
Chromosome7 (Build37)
Map Location 61,006,386 - 61,006,677
singlet/doubletsinglet
Overlap genenone
Upstream geneEG620782, LOC100040692, Gm1865, LOC100040718
Downstream geneLOC668789, Mrps33p, LOC622146
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-294K24.T7 (MSMg01no294_k24.b1)MSMg01-294K24.TJ (MSMg01no294_k24.g1)
ACCAG422796AG422797
length764748
length of high quality
(start - end)
321 (37 - 357)292 (68 - 359)
definitionCHROMAT_FILE: MSMg01no294_k24.b1 PHD_FILE: MSMg01no294_k24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:30:25 2005CHROMAT_FILE: MSMg01no294_k24.g1 PHD_FILE: MSMg01no294_k24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:30:25 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTTT
AGAATGAAAATTAGTAGCTGCCATGTGCATGCTCTTGGGGGCAGGGATGC
ACACCTGCTACAGTCAGACTGAAGTTATTGATTGACCTGTTTGAAAAACA
AAATCCAGAGAGTGAAAAGTAACAGTACAAAGCTTCTTTTGGGGAAGTCC
AGGTACTTTATTCGGTTGCAAATTAGCAAGGCTCAAGCTCTTTCTCTGGC
CTCCTTGTGGGCTGGCTGGCTTTGAGAATAGCTGGAAGACCACAGGTTCT
CTGGGAGTGGAGGCTGTGCTCTGAATTAACTTTGCTAGGTAATTAAGAAT
TTTAGCTATCTTTTATCACGACCCTCTCATATTGGAGTTAATATTAGACC
AGTCCAAGATTGAGTTAGCTTGTGACACTAGCTACATATGAATCAGAAGA
TGGGCTAGTTGGCCATCAGTGGAAAGAGAGGCCTATTGGTCGTGCAAACT
TTATATGCCTCAGNACAGGGGAATACCAGGGCCAAGAAAGTGAGAGTGGG
TGAGTGGGGGAGTGGGGTGAGGCACCACTTTCCTTCTTGCTATTTTCTGG
CCTGTTTCCGATGCCCTCCATCCNCTTGTTTTTCCCCTTCCGATCTTATT
TTTGCCCCCTTTCCGTCTGTTTTTCTTTTTGTACCCCCTCCCCTCTCTTC
ACACCTCTTCCTTGTTCATCTTGTTTTTCCTCCCNCTATTCCCATTGTTA
TCGACCTACGATAN
GTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXACTGAGCAAATATTGAAAGATTGAGACTTTAGG
ACTTCTTGCCAAAGGCCATCTCTTGGTAGAATAATGGTTAATGAACAAAA
CCAGTGTCTGGCAGGCTGAGCTGCATGTCTGCCTCATAGCTGGTGTGTCT
GAGCACCACTGACAAGCTGCTTAAGAAAGGCAGAACACTGTTCATAATGG
TGGTCTGCAGTCTGTTTCTCAAACGGAGAGCAGCCCAGATGGAACAGGGC
AAAAGCTAACCAAAGGCTCCTTTTTAGTCAGTTGTTGATTTATGCTTCNN
TTGACATGATTTTTTTTGCACCCCCACCCACTGGCTCCTGTTAGCTGTGT
ATTATAAAGAGCCATGCACTGTAATTATCACCAAAGGAGTGAGTTGCTGT
CACTCCCAGTCTCCTCTGCACCCAGCAGCTTCTAGGATGCTGCTGGGAGT
TGGGAACAGTATTTTACAGTCTGGGCTTTCTACAATGTGTCTATGTGTCC
AGCAAGAAGGGAAACCCAGAACGCATGGAAGGGAGGTGCAAGCNNTCTGG
GCCCGGGATCCAGGTTTGGTTTTCAGTGNTTGCTGAAGCTACNTAAGGGC
TGGGAGATATAAAGGCCTTCGCTGGNAAAGTATAAGCACCGCTCTTTTCA
AGGAAGGCAGCCCNCTTTCAGTCNTTNTGGATTCTNNTTAAAAAAAGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no294_k24.g1 MSMg01no294_k24.g1 CHROMAT_FILE:
MSMg01no294_k24.g1 PHD_FILE: MSMg01no294_k24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:30:25 2005
         (292 letters)



>mm_chr7_61006186_61006877
          Length = 692

 Score =  545 bits (282), Expect = e-160
 Identities = 289/292 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   actgagcaaatattgaaagattgagactttaggacttcttgccaaaggccatctcttggt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actgagcaaatattgaaagattgagactttaggacttcttgccaaaggccatctcttggt 260

                                                                       
Query: 61  agaataatggttaatgaacaaaaccagtgtctggcaggctgagctgcatgtctgcctcat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agaataatggttaatgaacaaaaccagtgtctggcaggctgagctgcatgtctgcctcat 320

                                                                       
Query: 121 agctggtgtgtctgagcaccactgacaagctgcttaagaaaggcagaacactgttcataa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agctggtgtgtctgagcaccactgacaagctgcttaagaaaggcagaacactgttcataa 380

                                                                       
Query: 181 tggtggtctgcagtctgtttctcaaacggagagcagcccagatggaacagggcaaaagct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tggtggtctgcagtctgtttctcaaacggagagcagcccagatggaacagggcaaaagct 440

                                                               
Query: 241 aaccaaaggctcctttttagtcagttgttgatttatgcttcnnttgacatga 292
           ||||||||||| |||||||||||||||||||||||||||||  |||||||||
Sbjct: 441 aaccaaaggcttctttttagtcagttgttgatttatgcttccgttgacatga 492


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 692
Length adjustment: 9
Effective length of query: 283
Effective length of database: 683
Effective search space:   193289
Effective search space used:   193289
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)