BAC Information

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BAC

Clone NameMSMg01-294N07
Chromosome7 (Build37)
Map Location 20,155,121 - 20,155,415
singlet/doubletsinglet
Overlap geneGemin7
Upstream genePsg23, Psg21, EG434540, BC050099, LOC666863, Sycp1-ps1, Psg19, Psg17, Mill2, Pglyrp1, C530028I08Rik, Nova2, Nanos2, P42pop, Irf2bp1, Foxa3, Sympk, Rshl1, Dmwd, Dmpk, Six5, EG243866, Fbxo46, Qpctl, Snrpd2, Gipr, Eml2, Gpr4, Opa3, Vasp, C79127, Rtn2, Fosb, D830036C21Rik, Ercc1, Cd3eap, Ppp1r13l, Ercc2, Klc3, Ckm, Mark4, 4933417E01Rik, Bloc1s3, Trappc6a, Nkpd1, BC024868
Downstream geneZfp296, Sfrs16, Relb, Clptm1, Apoc2, Apoc4, Apoc1, Apoe, Tomm40, Pvrl2, Bcam, Cblc, Bcl3, Ceacam16, Ceacam19, Pvr, 2210010C17Rik, EG243872, Ceacam20, Nlrp9b, EG667040, EG667067, LOC620401, V1rd21, EG620537, LOC100043519, EG620574, LOC100043523, EG545926, LOC100043528, LOC100042964, LOC100042966, LOC100043533, EG435949, LOC100043536, LOC100042968, LOC100042971, EG667129, EG667135, EG435946
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-294N07.T7 (MSMg01no294_n07.b1)MSMg01-294N07.TJ (MSMg01no294_n07.g1)
ACCAG422902AG422903
length739743
length of high quality
(start - end)		296 (72 - 367)235 (126 - 360)
definitionCHROMAT_FILE: MSMg01no294_n07.b1 PHD_FILE: MSMg01no294_n07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:30:35 2005CHROMAT_FILE: MSMg01no294_n07.g1 PHD_FILE: MSMg01no294_n07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:30:36 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CGTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCCAAGAAATCTCCGAAATTCCATGGAAGTTCCACCTCATCTAG
CTTTGTCTTTATCCTAGCTCTGCCATCCCAAACACAGGCACCTGCACAGC
AGACCTGCTGGACGACCTTGACATTACAGCCCCTAGGGAATACAGGAGCA
GTTATCCAGACAGGTCTGGAGAGAAAGAGGCGAGAGGAGAGTCGAAGTCT
TGGAAGAGGGAGCAGTAACATAGGACAGTGGTTTCCAGAAGGGCTTGGGA
ACAGTTCCAGGTCAGTCACACCACAGTGCAGTCCTGGATGAAATAAACTG
AGCCATGGCAGAGAACTTTTTTACAGGCACCCCCACGCATGAAGACTGGA
GCTTGAGACCTGTCTGGGTAGACTTCCAGGCAAGAAAATAGGTTAGAGTG
AGGAGGCTGAGCAGCTAACATGGAGCCTCATCACCCAGGACTTGAGTTGT
CTCCACTCTGAGAGATGTTGGTGCCCACACACTGCTCATGAGCTATCCAT
CCCCAGGAACCCCGTGCTTGCTGTCCAGAGCATAGACTTGTGGGAATGAG
GGAGGGACCGGGAGTCAGAGGTCCCTGCATCCCCTGCTTGTGCTGGCCCC
TGTGAGAGGATTAGTGCTGTGTGGGGCATGCAAAGCACTCAACAAGCTGT
ACCGGTAGAAAAAAGAAGTCTTCAAAGCAGGCTCCTAGG

CAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCTCCTTACCCCAACTCCTGCGCGCTCGC
CCACGTGCACACACTCCCAGCTCCAATTTTGTGTTTTGTTTTGAGTCAGG
GTCTCACTATGTAGCCCTGGCTGGCCTTGAACTTTCTATGCACGAGAGTG
TAGGGCAGAGGCAAGATGTGAGTCTCCTGATGTGGGTGCTGGAGGCCAAA
CTCTCGTAAGTACATGCTCTTAAGCAGTGAGCCATCTCTCCAGCCTTGGT
TTTCTGAGGAAGGGTCTCTGGTGTACCTGAGCTCTCCTTGAGCTCTCTGT
AGCTAAAGATTTTCTGAACTTCCCCTCCCGCTCCTTCGTCTTCAGTGCTA
GGGTTACAAGCATGAACCTCGCCACTAAAAAAAAAAATTTGCACTAGCGT
CGTGTCAACTCACTGTGGCAGCTGCCTCAGGATGCCAGTGCCTCAGGATG
TTCAGTGTGCCCTTGGCTGTGTAATAGAGTCCCCCCACCTCATCTGCAGT
AGCTCTTTCCAGCCATGTTCATCCGGAGACCATCAATGTGAGCCTGGCTA
CCCCTGAATTTCTGCCTGTCTACACTGGCCACCCCAAATTATCTGGAAAA
CCTCTATACATGTTGCCTTTGCGCCGCCTTTCCCCTTTTTACCTTTTTCC
TTAGTACATCACCACTCCCTACCTTCTTTTTTTTTTTTTTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no294_n07.b1 MSMg01no294_n07.b1 CHROMAT_FILE:
MSMg01no294_n07.b1 PHD_FILE: MSMg01no294_n07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:30:35 2005
         (296 letters)



>mm_chr7_20154921_20155616
          Length = 696

 Score =  563 bits (291), Expect = e-165
 Identities = 294/295 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaattccatggaagttccacctcatctagctttgtctttatcctagctctgccatcccaa 60
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 201 aaattccatggaagttccacctcatctagctttgtctttatccttgctctgccatcccaa 260

                                                                       
Query: 61  acacaggcacctgcacagcagacctgctggacgaccttgacattacagcccctagggaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acacaggcacctgcacagcagacctgctggacgaccttgacattacagcccctagggaat 320

                                                                       
Query: 121 acaggagcagttatccagacaggtctggagagaaagaggcgagaggagagtcgaagtctt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acaggagcagttatccagacaggtctggagagaaagaggcgagaggagagtcgaagtctt 380

                                                                       
Query: 181 ggaagagggagcagtaacataggacagtggtttccagaagggcttgggaacagttccagg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggaagagggagcagtaacataggacagtggtttccagaagggcttgggaacagttccagg 440

                                                                  
Query: 241 tcagtcacaccacagtgcagtcctggatgaaataaactgagccatggcagagaac 295
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tcagtcacaccacagtgcagtcctggatgaaataaactgagccatggcagagaac 495


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 296
Length of database: 696
Length adjustment: 9
Effective length of query: 287
Effective length of database: 687
Effective search space:   197169
Effective search space used:   197169
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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