BAC Information

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BAC

Clone NameMSMg01-294N19
Chromosome7 (Build37)
Map Location 134,478,474 - 134,649,075
singlet/doubletdoublet
Overlap geneZfp768, LOC100043097, LOC100043589, 6430604K15Rik, 9130019O22Rik, E430018J23Rik, LOC100043590, Zfp764, Zfp688, Zfp689, Prr14, Fbs1
Upstream geneLat, 2210013K02Rik, Nfatc2ip, Cd19, Rabep2, Atp2a1, Sh2b1, Tufm, Atxn2l, Eif3s8, Cln3, Apob48r, Il27, Nupr1, Ccdc101, Sult1a1, LOC629029, Giyd2, Bola2, Coro1a, Snrp1c-ps1, LOC100043044, Mapk3, Gdpd3, Ypel3, Tbx6, Ppp4c, Aldoa, 1500016O10Rik, 4930451I11Rik, Doc2a, Ccdc95, Hirip3, 1110032O16Rik, Kctd13, A830007L07Rik, Sez6l2, D830044I16Rik, Cdipt, Mvp, 2900092E17Rik, Maz, Kif22, 1810010M01Rik, AI467606, Qprt, Spn, Cd2bp2, Tbc1d10b, Mylpf, Sept1, LOC100043580, Zfp553, Zfp771, 2410015N17Rik, Sephs2, Itgal
Downstream gene1700008J07Rik, LOC100043597, D030022P06Rik, Phkg2, Gm166, Rnf40, 1700120K04Rik, Zfp629, Bcl7c, Ctf1, Ctf2, Fbxl19, Tmem142c, Setd1a, Hsd3b7, Stx1b2, Stx4a, Zfp668, Zfp646, BC039632, Vkorc1, Bckdk, Myst1, Prss8, Prss36, Fus, Pycard, Trim72, LOC436010, EG668675, Itgam, Itgax, Itgad, Cox6a2, LOC100043133, Armc5, Tgfb1i1, Slc5a2, BC017158, EG628781, Rgs10, LOC100043643, Tial1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-294N19.T7 (MSMg01no294_n19.b1)MSMg01-294N19.TJ (MSMg01no294_n19.g1)
ACCAG422925AG422926
length778740
length of high quality
(start - end)		233 (132 - 364)287 (79 - 365)
definitionCHROMAT_FILE: MSMg01no294_n19.b1 PHD_FILE: MSMg01no294_n19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:30:38 2005CHROMAT_FILE: MSMg01no294_n19.g1 PHD_FILE: MSMg01no294_n19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:30:38 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(134,648,843 - 134,649,075)(134,478,474 - 134,478,760)
sequence
AGATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCACCATCCCTTACCTGTGAGTATAGAGATGGGTGTATGGCAC
CATACCTACTGCCAACCCTAGTCTTTTGCCAAGATTTCTGTAGGGTAGCT
AGAATTTTCCTCAAGCTTACAGTAATCCTCCTACTCTTCACTGCAACAAC
AGTAAATATTGAGGTTACAGGCATGCATCACCATGTTCAACTCCATATAG
ATTTTTTCCCCTAAGATTTGAGTGTGTGCTCATAGTTGTGTGTGTACTTG
CATGTGATTGTCAGATCCCTTGGGACTGGAGTTATAAGTTGTCAGTCACC
ATATATGACACTTGTTGTGATCNGTTCTCCCACCCCCCGCAAGAGNAAGT
ACTCTGGTTTTTTTTGGGGGGTGGGGTGGAAAAGAGAAAAAAATAGGGGG
GGGGGGGGGGGTGCTTCTTATCTCCCTTATCATCCGAAAGCACAAACACC
GATTATTTACCATACTCCTTTTCTGATTTATATTGCGTTAGTCTTGTATC
GTTCGTTTAATGAGTTATTCTAGTAATACTACAAAAAAGCATATCTAGCG
AAAGATAAAAGCGTCCGGAATTGGTACAAAATAAATACACTCCCACCCTT
TCACTCACCTGCCACTTCCATTACTTACTATCCTCCCTATTATTCCCACA
CTAAAGTTTATCCTCATTCACGGTAACCTGTCAATTCGTTCTCCCCCCAT
CTCTCGTTCACCTCCCCTTCACCAGCCG

TTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTGTCCGCCTCTGATGGTTTTGT
GCTAGTGCAGTGCTTATTTAAATTAACACCTTTCCTCAAATGCTGTACCA
AATAGAACCAAAATTATCAACTCTGCTTCTCTTCTTCTGTATTAGGGTTG
GGTTTTTTGTTTTGTTTTATGTTTTGTTTTCTGCAATAAAGCACCCTAAA
GAAAGCAGCTTATGGGGAAAGGTTTGTGTGTTCACTTCCTCCCACTGTGG
CCCCATGTCCTGGCCTTTGGCTATGGTACTGGTCTTGGGGTCCAGCTGTA
GTCCCACATCCTCCATTTCCTCCTTCGACCCCCCCCGCTGTTGCACACCA
GGTTGGAGGGATGAAGTCTGGAATGTGTAAAAAAAAAAGAACCACCTGAT
AGTGCCAGCCAGGAGAAGGCCTTCTCAGAGGGTCTTAGTGTTGCAGCTCT
TTTAGATGATACTCAATGAAAAAGCTCTATTAGATGATGTCCAGTGAGAC
AGCTGGTGCACATACACTTTATTCGGAGTGATCAAGGGCTATATATGAAC
CTTATAGAGCGGGAAGGAGTTTTCAGGGTGAATGTAAAATCATTGGTTGG
CACTTAATGTATTGCGAATGCCTCATTTACATGGAAAGGTATTCCAGGGA
TCCAGCTTACTTATTGCATTTGGTTCTCAGGAATAGAGGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no294_n19.b1 MSMg01no294_n19.b1 CHROMAT_FILE:
MSMg01no294_n19.b1 PHD_FILE: MSMg01no294_n19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:30:38 2005
         (233 letters)



>mm_chr7_134648698_134649330
          Length = 633

 Score =  443 bits (229), Expect = e-129
 Identities = 232/233 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   agatttctgtagggtagctagaattttcctcaagcttacagtaatcctcctactcttcac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 agatttctgtagggtagctagaattttcctcaagcttacagtaatcctcctactcttcac 319

                                                                       
Query: 61  tgcaacaacagtaaatattgaggttacaggcatgcatcaccatgttcaactccatataga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 tgcaacaacagtaaatattgaggttacaggcatgcatcaccatgttcaactccatataga 259

                                                                       
Query: 121 ttttttcccctaagatttgagtgtgtgctcatagttgtgtgtgtacttgcatgtgattgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 ttttttcccctaagatttgagtgtgtgctcatagttgtgtgtgtacttgcatgtgattgt 199

                                                                
Query: 181 cagatcccttgggactggagttataagttgtcagtcaccatatatgacacttg 233
           |||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 198 cagatcccttggaactggagttataagttgtcagtcaccatatatgacacttg 146


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 233
Length of database: 633
Length adjustment: 9
Effective length of query: 224
Effective length of database: 624
Effective search space:   139776
Effective search space used:   139776
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no294_n19.g1 MSMg01no294_n19.g1 CHROMAT_FILE:
MSMg01no294_n19.g1 PHD_FILE: MSMg01no294_n19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:30:38 2005
         (287 letters)



>mm_chr7_134478274_134478960
          Length = 687

 Score =  485 bits (251), Expect = e-141
 Identities = 278/287 (96%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgtccgcctctgatggttttgtgctagtgcagtgcttatttaaattaacacctttcctca 60
           ||||||||||||||||||| ||||||||||||||||||||||||| || |  ||||||||
Sbjct: 201 tgtccgcctctgatggtttcgtgctagtgcagtgcttatttaaatgaatatatttcctca 260

                                                                       
Query: 61  aatgctgtaccaaatagaaccaaaattatcaactctgcttctcttcttctgtattagggt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aatgctgtaccaaatagaaccaaaattatcaactctgcttctcttcttctgtattagggt 320

                                                                       
Query: 121 tgggttttttgttttgttttatgttttgttttctgcaataaagcaccctaaagaaagcag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgggttttttgttttgttttatgttttgttttctgcaataaagcaccctaaagaaagcag 380

                                                                       
Query: 181 cttatggggaaaggtttgtgtgttcacttcctcccactgtggccccatgtcctggccttt 240
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||
Sbjct: 381 cttatggggaaaggtttgtgtgttcacttcctcccactgcggccccatgtcctgggcttt 440

                                                          
Query: 241 ggctatggtactggtcttggggtccagctgtagtcccacatcctcca 287
           |||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct: 441 ggctgtggtactggtcttggggtccagctgtagtcccgcatcctcca 487


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 687
Length adjustment: 9
Effective length of query: 278
Effective length of database: 678
Effective search space:   188484
Effective search space used:   188484
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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