BAC Information

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BAC

Clone NameMSMg01-295A11
Chromosome7 (Build37)
Map Location 140,935,063 - 140,935,294
singlet/doubletsinglet
Overlap geneDhx32
Upstream geneA930008G19Rik, 2010208K18Rik, C430003P19Rik, Zranb1, Ctbp2, LOC668747, 4930404H21Rik, LOC100043237, 2700050L05Rik, Mmp21, Uros, Bccip, LOC100043695
Downstream geneFank1, Adam12, A130023I24Rik, 4933400E14Rik, LOC100043248, LOC100043699, LOC668750, Dock1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-295A11.T7 (MSMg01no295_a11.b1)MSMg01-295A11.TJ (MSMg01no295_a11.g1)
ACCAG423040AG423041
length744754
length of high quality
(start - end)
232 (127 - 358)285 (78 - 362)
definitionCHROMAT_FILE: MSMg01no295_a11.b1 PHD_FILE: MSMg01no295_a11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:30:50 2005CHROMAT_FILE: MSMg01no295_a11.g1 PHD_FILE: MSMg01no295_a11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:30:50 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCATAAATCTTCCTCTCCAAACAGTGAGCTGTATGCATATACAAA
CAGTATCAGAAAGAAGTTTTGCCGCGTAGTAGATGATTACCATGGAGCCT
TTAATTTTTTTTTTAATATCTCAAAGGCCCCTGGGCAGGGGGAATCTTAC
ATCACCAATGAAGGAGGCTGAAGCTGGAAGATTTTGAATTTGAGACCAAC
ATCTCAGACAAACAAAGTCACTAATAGCCTCCCTGCTCCATCAGGCATGG
CAGCCGGCTTGCACAAGTACTCCAAGCTGATGATTACTGTGTAGCAACTT
CTGTTTGTTCNTTTTTGACCCCCCCCTCCCGCTTAATGATGTTAGCACCT
TGGTGACACAGTTGCCACCACCAAACAAAAAAGAGAATCTTAATGTGCGT
GGCTGGGCCGTGAGCCTGAGTTCTTTCCTTGTAAAGTATATGGCAGTACC
CAGAGTTCCACCAATGACAGGAAGGGAGGTAACTGTCCAGTAAGGATGTT
CCATGACAATACTGTGTAGTTTACAAAGCCACCGGCAAGTGTTCCTTGCA
TTTATTACCATTTGTAACAGTGAGTTTGCATAGGCTTGTGATTAACAGCA
GGACACCGGGTTGTCGTGATCACTGGTTACAGACCTCTGTTAGGAGAGGC
CTCTGACCAGGGTTTCTGTGGTGAGCCTTGAGGACTCACTGATC
TCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGC
AGAGAAGCACCTGAAAAAATGTTCAACATGCTTAATCATCAGGGAAATGC
AAATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAG
ATCAAAAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGATCTCCTGG
GCATATATCCAGAAGATGTCCCAACCGGTAAGAAGGACACATGCTCCACT
ATGTTCATAGCAGCCTTGTTTATAATAGCCAGAAGCTGGAAAGAACCCAG
ATGCCCCTCATTTTTATTTAATGCATCCCGCACCATGTGGTACATTTACA
CAATGGAGTACTACTCACCCACCAAAAGGAATGAATTTGTGAAATTCCTA
GGCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGAGGTAACCCAATC
ACAAAGAAACTCTCACAATATGTACTCACTGATAAGTGGATATTAGCCCA
GAAACTTAGGATACCCAAGATATAAGATACAATTTGCTAAACACATGAAA
CTCAAGAAGAATGAAGAACAAAGTGTGGACACTTTGCCCCTTCTTAGAAT
TGGGAACAAAACACCCATGGAAGGAGTTACAGAGACAAAGTTTGGAGCTG
TGACAAAAGGATGGACCATCTAGTGACTGCCATATCCAGGGATCCATTCC
ATAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no295_a11.b1 MSMg01no295_a11.b1 CHROMAT_FILE:
MSMg01no295_a11.b1 PHD_FILE: MSMg01no295_a11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:30:50 2005
         (232 letters)



>mm_chr7_140934863_140935495
          Length = 633

 Score =  418 bits (216), Expect = e-121
 Identities = 228/232 (98%), Gaps = 1/232 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tagtagatgattaccatggagcctttaa-ttttttttttaatatctcaaaggcccctggg 59
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 432 tagtagatgattaccatggagcctttaatttttttttttaatatctcaaaggcccctggg 373

                                                                       
Query: 60  cagggggaatcttacatcaccaatgaaggaggctgaagctggaagattttgaatttgaga 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 cagggggaatcttacatcaccaatgaaggaggctgaagctggaagattttgaatttgaga 313

                                                                       
Query: 120 ccaacatctcagacaaacaaagtcactaatagcctccctgctccatcaggcatggcagcc 179
           ||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 312 ccaacatctcagagaaacaaagtcactaataggctccctgctccatcaggcatggcagcc 253

                                                               
Query: 180 ggcttgcacaagtactccaagctgatgattactgtgtagcaacttctgtttg 231
           || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 ggtttgcacaagtactccaagctgatgattactgtgtagcaacttctgtttg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 232
Length of database: 633
Length adjustment: 9
Effective length of query: 223
Effective length of database: 624
Effective search space:   139152
Effective search space used:   139152
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)