BAC Information

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BAC

Clone NameMSMg01-296A11
Chromosome7 (Build37)7 (Build37)
Map Location 127,934,012 - 127,934,305127,934,117 - 127,934,656
singlet/doubletsingletsinglet
Overlap geneE030013G06Rik
Upstream geneExod1, 2610020H08Rik, Dcun1d3, LOC100043399, LOC100043396, Lyrm1, Dnahc3, Tmem159, Zp2, Anks4b, Crym, Abca14, Abca15, Abca16, LOC668429, LOC546994, LOC100042914, E130201H02Rik, LOC637957, Uqcrc2, 4930408O21Rik, BC030336
Downstream geneEG436008, LOC100043426, Eef2k, Polr3e, Cdr2, 4933427G17Rik, EG668548, Mettl9, LOC668456, Igsf6, Otoa, LOC668556, Hs3st2, Usp31, Scnn1g
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-296A11.T7 (MSMg01no296_a11.b1)MSMg01-296A11.TJ (MSMg01no296_a11.g1)
ACCAG423752AG423753
length721757
length of high quality
(start - end)
294 (428 - 721)540 (76 - 615)
definitionCHROMAT_FILE: MSMg01no296_a11.b1 PHD_FILE: MSMg01no296_a11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:32:07 2005CHROMAT_FILE: MSMg01no296_a11.g1 PHD_FILE: MSMg01no296_a11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:32:07 2005
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(127,934,012 - 127,934,305)(127,934,117 - 127,934,656)
sequence
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTTACAAGTAGAATGCAGTAATAG
TTTAATAAAGTCACCCGAGGCACCCGACCAGCAAAAGGAACCTTTTGTGA
CCTGTGGTGGAAAGGGCCTAGATGTTATCACTCCAGTGAATGCCTTGTCT
ATCAGGAGGGCCCAATGGAAGTCATGATACAACCTAGCCCTCCTCATACT
GAGTCAGCTGTGAACCACTGAAGGTCCCGGAGGAAGGCCCTGAGTTTCTG
AGGTTCTCCCAGAGTGGGGATATTAAGAGAGGTAGGGATGAGTCTGGGCT
ATTGGGCTTCTTTTTGTGAATCCACCACATGCCTTGGAAACACAGCCCTA
TGAGTAAGCTATACATCCCGCGATAGACTTCCCTATTCTGAAATGTGTTG
TGTTCACTAGTGTCTCAGTCAGCAATCTGCTGAACAGCTTTCAGGTTTCA
CTGACTCTTCTGCTCACAGTGTTGTCCCATGAAGGTCATTCCACTAGAAG
GCCCCTCACCAAAGGAGTAGTTTATGTACCCATGTTTGATGGCTGTGACT
GAAGATGCTCCCCAGCAGGTTTAGGTTGAATCTGAGAGTCCCATCATTGC
CCCTGCTAAGCTTAGTCACCAGCAACAAATCCTATTAGTGACCTTACTCT
TTCCCTACAAATCCTTCAGGT
CATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTTTACAAGTAGAATGCAGTAATAGT
TTAATAAAGTCACCCGAGGCACCAGACCAGCAAAAGGAACCTTTTGTGAC
CTGTGGTGGAAAGGGCCTAGATGTTATCACTCCAGTGAATGCCTTGTCTA
TCAGGAGGGCCCAATGGAAGTCATGATACAACCTAGCCCTCCTCATACTG
AGTCAGCTGTGAACCACTGAAGGTCCCGGAGGAAGGCCCTGAGTTTCTGA
GGTTCTCCCAGAGTGGGGATATTAAGAGAGGTAGGGATGAGTCTGGGCTA
TTGGGCTTCTTTGAGTGAATCCAGGAAATGCCTTGGAAACACAGCCCTAT
GAGTAAGCTATACATCCTGGGATAGACTTCCCTATTCTGAAATGTGTTGT
GTTCACTAGTGTCTCAGTCAGCAATCTGCTGAACAGCTTTCAGGTTTCAC
TGACTCTTCTGCTCACAGTGTTGTCCCATGAAGGTCATTCCACTAGAAGG
CCCCTCACCAAAGGAGTAGTTTATGTACCCATGTTTGATGGCTGTGACTG
AAGATGCTCCCCAGCAGGTTTAGGTTGAATCTGAGAGTCCCATCATTGCC
CCTGCTAAGCTTAGTCACCAGCACCAAATCCTATTAGTGACCTTACTCCT
TCCCTACAAATCCTTCAGGTTAAGCTACCACTTGCAGAGGAGGCGAGTGT
ATTTTCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no296_a11.b1 MSMg01no296_a11.b1 CHROMAT_FILE:
MSMg01no296_a11.b1 PHD_FILE: MSMg01no296_a11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:32:07 2005
         (294 letters)



>mm_chr7_127933812_127934505
          Length = 694

 Score =  561 bits (290), Expect = e-164
 Identities = 293/294 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cttccctattctgaaatgtgttgtgttcactagtgtctcagtcagcaatctgctgaacag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 cttccctattctgaaatgtgttgtgttcactagtgtctcagtcagcaatctgctgaacag 435

                                                                       
Query: 61  ctttcaggtttcactgactcttctgctcacagtgttgtcccatgaaggtcattccactag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 ctttcaggtttcactgactcttctgctcacagtgttgtcccatgaaggtcattccactag 375

                                                                       
Query: 121 aaggcccctcaccaaaggagtagtttatgtacccatgtttgatggctgtgactgaagatg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 aaggcccctcaccaaaggagtagtttatgtacccatgtttgatggctgtgactgaagatg 315

                                                                       
Query: 181 ctccccagcaggtttaggttgaatctgagagtcccatcattgcccctgctaagcttagtc 240
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 ctccccagcaggcttaggttgaatctgagagtcccatcattgcccctgctaagcttagtc 255

                                                                 
Query: 241 accagcaacaaatcctattagtgaccttactctttccctacaaatccttcaggt 294
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 accagcaacaaatcctattagtgaccttactctttccctacaaatccttcaggt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 294
Length of database: 694
Length adjustment: 9
Effective length of query: 285
Effective length of database: 685
Effective search space:   195225
Effective search space used:   195225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no296_a11.g1 MSMg01no296_a11.g1 CHROMAT_FILE:
MSMg01no296_a11.g1 PHD_FILE: MSMg01no296_a11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:32:07 2005
         (540 letters)



>mm_chr7_127933917_127934856
          Length = 940

 Score = 1044 bits (540), Expect = 0.0
 Identities = 540/540 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttacaagtagaatgcagtaatagtttaataaagtcacccgaggcaccagaccagcaaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 tttacaagtagaatgcagtaatagtttaataaagtcacccgaggcaccagaccagcaaaa 681

                                                                       
Query: 61  ggaaccttttgtgacctgtggtggaaagggcctagatgttatcactccagtgaatgcctt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 ggaaccttttgtgacctgtggtggaaagggcctagatgttatcactccagtgaatgcctt 621

                                                                       
Query: 121 gtctatcaggagggcccaatggaagtcatgatacaacctagccctcctcatactgagtca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 gtctatcaggagggcccaatggaagtcatgatacaacctagccctcctcatactgagtca 561

                                                                       
Query: 181 gctgtgaaccactgaaggtcccggaggaaggccctgagtttctgaggttctcccagagtg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 gctgtgaaccactgaaggtcccggaggaaggccctgagtttctgaggttctcccagagtg 501

                                                                       
Query: 241 gggatattaagagaggtagggatgagtctgggctattgggcttctttgagtgaatccagg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 gggatattaagagaggtagggatgagtctgggctattgggcttctttgagtgaatccagg 441

                                                                       
Query: 301 aaatgccttggaaacacagccctatgagtaagctatacatcctgggatagacttccctat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 aaatgccttggaaacacagccctatgagtaagctatacatcctgggatagacttccctat 381

                                                                       
Query: 361 tctgaaatgtgttgtgttcactagtgtctcagtcagcaatctgctgaacagctttcaggt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 tctgaaatgtgttgtgttcactagtgtctcagtcagcaatctgctgaacagctttcaggt 321

                                                                       
Query: 421 ttcactgactcttctgctcacagtgttgtcccatgaaggtcattccactagaaggcccct 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 ttcactgactcttctgctcacagtgttgtcccatgaaggtcattccactagaaggcccct 261

                                                                       
Query: 481 caccaaaggagtagtttatgtacccatgtttgatggctgtgactgaagatgctccccagc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 caccaaaggagtagtttatgtacccatgtttgatggctgtgactgaagatgctccccagc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 540
Length of database: 940
Length adjustment: 10
Effective length of query: 530
Effective length of database: 930
Effective search space:   492900
Effective search space used:   492900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)