Query= MSMg01no297_b24.b1 MSMg01no297_b24.b1 CHROMAT_FILE:
MSMg01no297_b24.b1 PHD_FILE: MSMg01no297_b24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:33:29 2005
(687 letters)
>mm_chr7_106251950_106253036
Length = 1087
Score = 973 bits (503), Expect = 0.0
Identities = 615/689 (89%), Gaps = 63/689 (9%)
Strand = Plus / Plus
Query: 3 gaattcatattcacttacca-tcaacaggccagcaactgcatatgtctttaaataatgga 61
||||||||||||||| | | ||||||| |||||||||||||||||||||||||||||||
Sbjct: 203 gaattcatattcactga-gattcaacagaccagcaactgcatatgtctttaaataatgga 261
Query: 62 aatggaaaaaatgaaaagctaccaagttatatcaaacaaatatcataaacgtaaagtttc 121
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 262 aatggaaaaaatgaaaagctaccaagttatatcaaacaaatattataaacgtaaagtttc 321
Query: 122 aggccagtcacagggcctcgtgcctataattctagtacttactggatg-aagtactaagg 180
|||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct: 322 aggccagtcacagggcctcgtgcctataattctagtacttactgga-gtaagtactaagg 380
Query: 181 cttaggcaagaagattattcaaggccaacctgagttacattataagattttatctctaga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cttaggcaagaagattattcaaggccaacctgagttacattataagattttatctctaga 440
Query: 241 actggtgagatggctcagcagttaagagcactgactgctcttccaaaggtcctgagttca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 actggtgagatggctcagcagttaagagcactgactgctcttccaaaggtcctgagttca 500
Query: 301 aatcccagcaaccacatggtggctcacaaccatccgtaacaaaatctgatgccctcttct 360
||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||
Sbjct: 501 aatcccagcaaccacatggtggctcacaaccatccataacgaaatctgatgccctcttct 560
Query: 361 gga-atgtctgaagacagctacagtgtacttacatataataaataaataaataaataaat 419
||| | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ggaga-gtctgaagacagctacagtgtacttacatataataaataaataaataaa----- 614
Query: 420 aaataaataaataaataaataaataaacaaacaaacaaacaaacaaacaaacgtgtttt- 478
||||||||
Sbjct: 615 ---------------------------------------------------cgtgttttt 623
Query: 479 aaaaaatattttatctctaattacgtaaagtctgaaatccttgcattaggtttgcttatt 538
|||||| | ||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 624 aaaaaaaaatttatctctaattacttaaagtctgaaatccttgcattaggtttgcttatt 683
Query: 539 cttaaacttggcattagctagcatgttctcccactgttctaacgtgagatcatcaaaacg 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 cttaaacttggcattagctagcatgttctcccactgttctaacgtgagatcatcaaaacg 743
Query: 599 gccaatcaatactaggaaaggtgtccagtcagaacagtctatgaggacatacaaactgac 658
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 744 gccaatcaatactaggaaaggtgtccagtcagaacagtctatgaggacgtacaaactgac 803
Query: 659 gtcacaatgataccacagccccaccacaa 687
|||||||||||||||||| ||||||||||
Sbjct: 804 gtcacaatgataccacagtcccaccacaa 832
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 687
Length of database: 1087
Length adjustment: 10
Effective length of query: 677
Effective length of database: 1077
Effective search space: 729129
Effective search space used: 729129
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no297_b24.g1 MSMg01no297_b24.g1 CHROMAT_FILE:
MSMg01no297_b24.g1 PHD_FILE: MSMg01no297_b24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:33:29 2005
(429 letters)
>mm_chr7_106419191_106420019
Length = 829
Score = 801 bits (414), Expect = 0.0
Identities = 417/418 (99%)
Strand = Plus / Minus
Query: 1 tgaggcagggctctgacttttgccttaacaatagagtctctatttatgccagtcttctgg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 tgaggcagggctctgacttttgccttaacaatagagtctctatttatgccagtcttctgg 559
Query: 61 ctgcatgagaggagtgcctgcagagcctactgaagcgcccacacacagggttagcataag 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 558 ctgcatgagaggagtgcctgcagagcctactgaagcgcccacacacagggttagcagaag 499
Query: 121 acactaactctgtagcccttccttccacacttaggaaaagggcacctaactgactgtgga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 acactaactctgtagcccttccttccacacttaggaaaagggcacctaactgactgtgga 439
Query: 181 gctgaatgaagacctcagaagtcacagctgcacaaggccagctccatcattatcacacac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 gctgaatgaagacctcagaagtcacagctgcacaaggccagctccatcattatcacacac 379
Query: 241 atctgcttcctcagtacccaagcccggtgctgctacatgttcaagtcaactaggatctat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 atctgcttcctcagtacccaagcccggtgctgctacatgttcaagtcaactaggatctat 319
Query: 301 cagctagctgatgttggtagaaacataaaggaaggcccaaaagctaaacattcagagatg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 cagctagctgatgttggtagaaacataaaggaaggcccaaaagctaaacattcagagatg 259
Query: 361 tgcactggatggatgtgaggtgagaaagcaggccaaggctgcatgcagcacagggaga 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 tgcactggatggatgtgaggtgagaaagcaggccaaggctgcatgcagcacagggaga 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 429
Length of database: 829
Length adjustment: 9
Effective length of query: 420
Effective length of database: 820
Effective search space: 344400
Effective search space used: 344400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
