BAC Information

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BAC

Clone NameMSMg01-298B24
Chromosome7 (Build37)
Map Location 100,806,215 - 100,806,890
singlet/doubletsinglet
Overlap genenone
Upstream genePcf11, LOC676240, LOC100040007, 4632427E13Rik, Rab30, 4632434I11Rik, Prcp, A830059I20Rik, LOC100040298, LOC666783
Downstream geneEG638305, EG545982
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-298B24.T7 (MSMg01no298_b24.b1)MSMg01-298B24.TJ (MSMg01no298_b24.g1)
ACCAG425264AG425265
length755750
length of high quality
(start - end)
676 (76 - 751)676 (75 - 750)
definitionCHROMAT_FILE: MSMg01no298_b24.b1 PHD_FILE: MSMg01no298_b24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:34:44 2005CHROMAT_FILE: MSMg01no298_b24.g1 PHD_FILE: MSMg01no298_b24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:34:44 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTACGAAGACCGCGGA
ATTCAATAAGTACATACCATGAATAGAACCACAGAACTTAAATATAGAGT
AAAGGAATGGGGGAAGGTTGGACCACCCTAGGAAGGGAAGGCAAAATAGC
TAATTACAGATGAAGGGAAGCAAGTGCTAGAAGTGAAGGATCAAATGGCA
AGATGACAGAAACAAGGTGAGATAGGGAATACAGGGATTGACAGCTAAAA
CTAAAAGCTATTCACTGTTTTTAAAAGTGCATGCATGTGTATACTAATCC
ACATAGTGTTTATGCAGCAGTACATATTCATACATAAAATGAATGAAATG
TTTTTCCAGGTCATAGAACCCTAGTCAGTAAAGATGAAATAGAAATATAG
TGCTAATTATGCAGTAAGATTAGTTCTTTATACGTCTGTCCATTTGTGCA
GAAAAAAATACAGGAAGAGCAGAGAAAATTCTAATGATAACAGGAATTTT
ATAGTGCACCTTGGATGAGCTATGTGTAAAAAAAATGCCAAGTAATATAG
ATGAAATGAGACAGTGATACTTTTCAGAATACACTGTATTGTTTAATTCT
AAATTTGAAACCACACTGTGATTTTCACAGTCAAAGAGGCAAATCAGAAA
AGTCAACACTATTCGTCAAAACTTCTAAGTGGTATACAAACATAAACAAG
TGAACCCAATCATCTGTAAGTCATATTTCTATTATAAACTTATCTCACTG
TTGCT
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTCACCCAAGGAATACCGAAAGGCTGA
GAAACATCTGAAAAAATGTTCAACATCCTTAATCATCAGAGAAATGCAAA
TCAAAACAACCCTGAGATTCCATCTCACACCAGTCAGAATGGCTAAGATC
AAAAATTCAGGTGATAGCAGATGCTGGTGAGGATGTGGAGAAAGAGAAAC
ACTCCTCCATTGTTGGTGGGATTGCAAGCTTGTACAACCACTCTGGAAAT
CAGTCTGGTGGTTCCTCCGAAAATTGGACATAGTACTACCGGAGGATCCC
GCAATACCTCTCCTGGGCATATATCCAGAAGATGTCCCAACCGTTAAGAA
GGACACATGCTCCACTATGTTCATAGCAGCCTTATTTAATAGCCAGAAGC
TGGAAAGAACCCAGATGTCCCTCAACAGAGGAATGGATACAAAAAGTGTG
GTACATTTACACAATGGAGTAATACTCAACTATTAAAAAGAATGAATTCA
CGAAATTCCTAGGCAAATGGTTGGACCTGGAGGGCATCATCCTGAGTGAG
GTAACCCAATCACAAAAGAACTCAAATGAAATGTACTCACTGATAAGTGG
ATATTAACCCAGAAACTTAGTATAGTGAGATATAAGGTACAATATGTAAA
ACGTATGAAACTGAAGAAGAACGAAGACCAAAGTGTGGACACTTTGCTCA

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no298_b24.b1 MSMg01no298_b24.b1 CHROMAT_FILE:
MSMg01no298_b24.b1 PHD_FILE: MSMg01no298_b24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:34:44 2005
         (676 letters)



>mm_chr7_100806145_100807220
          Length = 1076

 Score = 1276 bits (660), Expect = 0.0
 Identities = 672/676 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   gaaccacagaacttaaatatagagtaaaggaatgggggaaggttggaccaccctaggaag 60
           |||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||
Sbjct: 746 gaaccacagaacttaaatattgagtaaaggattgggggaaggttggaccaccctaggaag 687

                                                                       
Query: 61  ggaaggcaaaatagctaattacagatgaagggaagcaagtgctagaagtgaaggatcaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 686 ggaaggcaaaatagctaattacagatgaagggaagcaagtgctagaagtgaaggatcaaa 627

                                                                       
Query: 121 tggcaagatgacagaaacaaggtgagatagggaatacagggattgacagctaaaactaaa 180
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 tggcaagatgacagaaacagggtgagatagggaatacagggattgacagctaaaactaaa 567

                                                                       
Query: 181 agctattcactgtttttaaaagtgcatgcatgtgtatactaatccacatagtgtttatgc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 agctattcactgtttttaaaagtgcatgcatgtgtatactaatccacatagtgtttatgc 507

                                                                       
Query: 241 agcagtacatattcatacataaaatgaatgaaatgtttttccaggtcatagaaccctagt 300
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 506 agcagtacatattcatacataaaacgaatgaaatgtttttccaggtcatagaaccctagt 447

                                                                       
Query: 301 cagtaaagatgaaatagaaatatagtgctaattatgcagtaagattagttctttatacgt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 cagtaaagatgaaatagaaatatagtgctaattatgcagtaagattagttctttatacgt 387

                                                                       
Query: 361 ctgtccatttgtgcagaaaaaaatacaggaagagcagagaaaattctaatgataacagga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 ctgtccatttgtgcagaaaaaaatacaggaagagcagagaaaattctaatgataacagga 327

                                                                       
Query: 421 attttatagtgcaccttggatgagctatgtgtaaaaaaaatgccaagtaatatagatgaa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 attttatagtgcaccttggatgagctatgtgtaaaaaaaatgccaagtaatatagatgaa 267

                                                                       
Query: 481 atgagacagtgatacttttcagaatacactgtattgtttaattctaaatttgaaaccaca 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 atgagacagtgatacttttcagaatacactgtattgtttaattctaaatttgaaaccaca 207

                                                                       
Query: 541 ctgtgattttcacagtcaaagaggcaaatcagaaaagtcaacactattcgtcaaaacttc 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 ctgtgattttcacagtcaaagaggcaaatcagaaaagtcaacactattcgtcaaaacttc 147

                                                                       
Query: 601 taagtggtatacaaacataaacaagtgaacccaatcatctgtaagtcatatttctattat 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146 taagtggtatacaaacataaacaagtgaacccaatcatctgtaagtcatatttctattat 87

                           
Query: 661 aaacttatctcactgt 676
           ||||||||||||||||
Sbjct: 86  aaacttatctcactgt 71


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 676
Length of database: 1076
Length adjustment: 10
Effective length of query: 666
Effective length of database: 1066
Effective search space:   709956
Effective search space used:   709956
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)