BAC Information

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BAC

Clone NameMSMg01-298E03
Chromosome7 (Build37)
Map Location 82,269,975 - 82,270,397
singlet/doubletsinglet
Overlap geneSv2b
Upstream geneLOC100042140, LOC546979, Slco3a1, EG665308, EG665641, 0610006L08Rik
Downstream gene1500012K07Rik, LOC100042171, Akap13, Klhl25, LOC100042210
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-298E03.T7 (MSMg01no298_e03.b1)MSMg01-298E03.TJ (MSMg01no298_e03.g1)
ACCAG425359AG425360
length731726
length of high quality
(start - end)
431 (46 - 476)167 (73 - 239)
definitionCHROMAT_FILE: MSMg01no298_e03.b1 PHD_FILE: MSMg01no298_e03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:34:54 2005CHROMAT_FILE: MSMg01no298_e03.g1 PHD_FILE: MSMg01no298_e03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:34:54 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTGTGCTTTGCTTTTAATCATGAAAACCTGAAACAGTGTGATTCTG
AAATGATCTTTGTGTCTTGCCTTATGCACTGAATCTGTACAGAGGAAACA
ATTCCCTTTTGATTTTTTTAAACTGGTTTTTAATTGTGCAAGTTTTAGAT
TATGCACAGTCTCCAGGAATGAATCGGAGATGGAAACCACAGACCTCCCA
GAATGCTGGTTTTATGACTGTCATGCTGTATTGTTGTATAGCATCAGTCT
CATTCAGAATTTTTGCTTATATGAATAAAAAAAAAAAAACGAAGTATAGA
CTAAGGAAATATCAGAATGATACCTAATGTATGTCCTTCCTGGGGGTAGA
AGCCATTTCTCTCTCACAAAAGCTGGCACTGATGGCTAGGAATCCCTTCA
CTCCTGCTTCAGCTCTGCCTCTCGGCTTTGGTTCTAAGCCCCAGCCCATC
TTTGTGTATTCCTCCCAGGGTGTCCTTCTTCTTACCTGTGTTGTAGAAGG
TGGTCGATTCCATGGTGCAGTTCTTGAAATACGTATCTGTGCATGTCACA
TCTTCAAAATAGCATTTGTCACAGAATGTGTCCTCAAAGAGGACATGTTT
AAAATACATCTTTATGAACCTGTGAGGAAGACAGCATCTGTGAGCGAAGT
GTTCCAGTGAAAGAAGAATGCTTGCGACCAN
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAAACATGGAGGTGA
CCTATAGAAGTTTCGCGAAATTCAGTCAGGGTGCAACCTCTGTGATAAGA
GATAGAGATGTGGGAAGAGAGGATGGTGGTCTAGATCAGATGGGATGGGG
GTTGTGATGCTGAAAAGCAATCAAGTTCTGCATATATCTGGTGGTAGAGC
AGACACGATCTCTAATGAGTTACACTTTGGGCGCGAGAAAGGAGGATTCA
TTATTTTGAGGTAAGGGACAGGATAGATTAGCCATTCCTGTTATTGAATA
TGAGCCGCTGGATAGTCAGTGTATTATTCACGTTCACAAATGTATCACGA
GTTCAGAGAATAATCCCAGGACGGTTACTTAAGTTCCAATGACGCCAGTA
AGGCCTGCATTTGTCCCCTCAGTGAGCTGAATCACTGTTATGTGTGCAGG
GACCAGATTCTGCCACCATGTGCTCAGTGACTGTCTGTGTGATGACTGAA
AAGAACAGTTTCTCTACAGGTAACTGGAGGCTTGTTCTGCTGGGCCTTGA
AGTGTTATTCTGAAGAGATCTCTTTTGTTCTCACGGTTTCCTGAGCCCCT
TACCTGTCCACCTTGGTCAGCGCACCCCGCCCCCATATGTGAAGCCTTCT
ATTGCCTATTTTTTTTGTTAATACTCCCCATCTTTTATGCTTTCCCTAGT
ACCCCTTGTTTTCCTCCTAACATTGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no298_e03.b1 MSMg01no298_e03.b1 CHROMAT_FILE:
MSMg01no298_e03.b1 PHD_FILE: MSMg01no298_e03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:34:54 2005
         (431 letters)



>mm_chr7_82269771_82270597
          Length = 827

 Score =  783 bits (405), Expect = 0.0
 Identities = 420/427 (98%), Gaps = 4/427 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctgtgctttgcttttaatcatgaaaacctgaaacagtgtgattctgaaatgatct 64
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctgtgctttgtttttaatcatgaaaacctgaaacagtgtgattctgaaatgatct 264

                                                                       
Query: 65  ttgtgtcttgccttatgcactgaatctgtacagaggaaacaattcccttttgattttttt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ttgtgtcttgccttatgcactgaatctgtacagaggaaacaattcccttttgattttttt 324

                                                                       
Query: 125 aaactggtttttaattgtgcaagttttagattatgcacagtctccaggaatgaatcggag 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aaactggtttttaattgtgcaagttttagattatgcacagtctccaggaatgaatcggag 384

                                                                       
Query: 185 atggaaaccacagacctcccagaatgctggttttatgactgtcatgctgtattgttgtat 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 atggaaaccacagacctcccagaatgctggttttatgactgtcatgctgtattgttgtat 444

                                                                       
Query: 245 agcatcagtctcattcagaatttttgcttatatgaataaaaaaaaaaaaacgaagtatag 304
           ||||||||||||||||||||||||||||||||||||||||||||||    ||||||||||
Sbjct: 445 agcatcagtctcattcagaatttttgcttatatgaataaaaaaaaa----cgaagtatag 500

                                                                       
Query: 305 actaaggaaatatcagaatgatacctaatgtatgtccttcctgggggtagaagccatttc 364
           |||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||
Sbjct: 501 actaaggaaatatcagaatgatacctaatgtatgcccttcctgggggtagaagtcatttc 560

                                                                       
Query: 365 tctctcacaaaagctggcactgatggctaggaatcccttcactcctgcttcagctctgcc 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tctctcacaaaagctggcactgatggctaggaatcccttcactcctgcttcagctctgcc 620

                  
Query: 425 tctcggc 431
           |||||||
Sbjct: 621 tctcggc 627


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 431
Length of database: 827
Length adjustment: 9
Effective length of query: 422
Effective length of database: 818
Effective search space:   345196
Effective search space used:   345196
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)