BAC Information

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BAC

Clone NameMSMg01-298E19
Chromosome7 (Build37)
Map Location 107,957,454 - 108,019,628
singlet/doubletdoublet
Overlap geneB930006L02Rik, Tnfrsf19l, Arhgef17
Upstream geneNeu3, Spcs2, Xrra1, EG330602, Chrdl2, Pold3, 2610209A20Rik, Kcne3, LOC631577, Pgm2l1, Gpx2-ps1, P4ha3, Ppme1, AU020772, Ucp3, Ucp2, Dnajb13, LOC667112, Chchd8, Mrpl48, LOC100041155, Rab6, LOC100041167, Plekhb1, LOC100041204
Downstream geneP2ry6, P2ry2, LOC100049539, EG435996, Fchsd2, EG622673, Atg16l2, Stard10, Centd2, Pde2a, Art2a, EG630138, Art2b, Clpb, Phox2a, Inppl1, Folr2, Folr1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-298E19.T7 (MSMg01no298_e19.b1)MSMg01-298E19.TJ (MSMg01no298_e19.g1)
ACCAG425387AG425388
length753758
length of high quality
(start - end)		707 (47 - 753)622 (75 - 696)
definitionCHROMAT_FILE: MSMg01no298_e19.b1 PHD_FILE: MSMg01no298_e19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:34:57 2005CHROMAT_FILE: MSMg01no298_e19.g1 PHD_FILE: MSMg01no298_e19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:34:57 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(107,957,454 - 107,958,158)(108,019,060 - 108,019,628)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAAGAGCCGCGG
AATTCCAAAGAATTTCATCACTCTACCCTGATCTGTTTCACAACTGAAGT
AGCCAGCTTGTCACTTAATTAGCAATCTAGAGATGGGCCACTTCTCAAGG
AGAAAGTCAAGGAATATAATCCGGGAAGCTAAGTGCTCCAGTCTCAAGAG
TGAAATCTGTATTCAGCTTCCTGTAAGAGACTGTGTGCCACAGACAGCCA
TGTTCCTACTTTGTCATTTCAGATGAGCTGCTTTAGAGGAAAATTACAGG
CTCATCCTTTAATGTGTTTTATTTTATTTTTATATATTTGTTTATTTTGT
GACAGGATCTCACTATGTAGCTCTGGCTGTCCTAAAACTCACTTTGTAGA
CCAGGCTGGCCTAGAATTTATAGAGATTAACCTGACTCAGCCTTCTCCAG
AGTGCTGGGATGAAAGACACATACAACCACATCCAGCTAAATCCTTCAAT
GTTGCTCATTAGAATTATTATTTAATTTATTTCTTTTGAGGCAGGGTACC
CCAGGCTGGCCAAGAACTCGTTGTAGCTCAGGCTGGCCTGAACTTTATGA
TTTTCATGTCTCAGCCTTCTGAAGGCAACATAAGTGGTAAGAAGTAGTCA
AATACTGGATTCTTTTTTTTTAAACATGTGTGCCTTCTCCCACAGTGCAT
GTGTGCATGCGCATGCATATGCAGGTATGTGTGTAAGTCCCTAGCCCTCT
CTA

NCAATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXCAGAAATTCCACCCAGCCTGGTCTACCAAGCGTGT
TCTAGGTCAGCCAGTGCTGCATGGTGAGACCCCTTCCCCATTTCAAAACA
AAATGGTTCTACATGGCAAGACACACACACACAAAGGGAGAAAGTGTAGG
TGTGTGCTTTTATTAACTCGCGTGCATCCCTCGGGTCTGCTGGGTCTTCA
ACACCACAGGACATGTACAGGACATCTTGCTAGCAGCATTTTCGTGAGGA
GACGGTTGTGCCTGTGTGGAGATATGTAAGGAACACGGGCTTTGCATGGA
ACGGCTTCTCTTTGGAATCTTGTCTGATAGCAGCCATGTGACCAGGCCAA
GTTATTTCCTTCTCAGTAATGGGGTCTGATAACCTCTTTTCCCCTACAGG
ATGGTTGGCTAGTGCATGTAGTTCTTGAAATGCAAAGAGGTCCATTTCTG
GCCCTTAAATCTAAAGGGTGCCTGCGTCTGGAGACCTGAGTTGGCGGTCA
GAGCCCAGTGATCTACATGTTGAAGGCCCACCTCAGGCTCCTCCCCGCTG
CCACTAGTCCAGTTATTTGCATTTCTGACAGTGGCTGCCACCTTTAGTGC
TTCAGTCATTTCTGCTACTCCAGGATTTCTGCCTCAACAGAGGCCCAAAG
CAGACTTCACTTTCAGGACTAGATACATAGGGCTGGGTCTGCGCCATCCT
CCCCGGGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no298_e19.b1 MSMg01no298_e19.b1 CHROMAT_FILE:
MSMg01no298_e19.b1 PHD_FILE: MSMg01no298_e19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:34:57 2005
         (707 letters)



>mm_chr7_107957252_107958358
          Length = 1107

 Score = 1317 bits (681), Expect = 0.0
 Identities = 699/705 (99%), Gaps = 1/705 (0%)
 Strand = Plus / Plus

                                                                       
Query: 4   gaattccaaag-aatttcatcactctaccctgatctgtttcacaactgaagtagccagct 62
           ||||||||||| || | ||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 203 gaattccaaagaaaatccatcactctaccctgatctgtttcagaactgaagtagccagct 262

                                                                       
Query: 63  tgtcacttaattagcaatctagagatgggccacttctcaaggagaaagtcaaggaatata 122
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 263 tgtcacttaattagcaatctagagatgggccacttctcaagaagaaagtcaaggaatata 322

                                                                       
Query: 123 atccgggaagctaagtgctccagtctcaagagtgaaatctgtattcagcttcctgtaaga 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 atccgggaagctaagtgctccagtctcaagagtgaaatctgtattcagcttcctgtaaga 382

                                                                       
Query: 183 gactgtgtgccacagacagccatgttcctactttgtcatttcagatgagctgctttagag 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 gactgtgtgccacagacagccatgttcctactttgtcatttcagatgagctgctttagag 442

                                                                       
Query: 243 gaaaattacaggctcatcctttaatgtgttttattttatttttatatatttgtttatttt 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 gaaaattacaggctcatcctttaatgtgttttattttatttttatatatttgtttatttt 502

                                                                       
Query: 303 gtgacaggatctcactatgtagctctggctgtcctaaaactcactttgtagaccaggctg 362
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 gtgacaggatctcactatgtagctctggctgtcctaaaactcactttgtagaccaggctg 562

                                                                       
Query: 363 gcctagaatttatagagattaacctgactcagccttctccagagtgctgggatgaaagac 422
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 gcctagaatttatagagattaacctgactcagccttctccagagtgctgggatgaaagac 622

                                                                       
Query: 423 acatacaaccacatccagctaaatccttcaatgttgctcattagaattattatttaattt 482
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 acatacaaccacatccagctaaatccttcaatgttgctcattagaattattatttaattt 682

                                                                       
Query: 483 atttcttttgaggcagggtaccccaggctggccaagaactcgttgtagctcaggctggcc 542
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 atttcttttgaggcagggtaccccaggctggccaagaactcgttgtagctcaggctggcc 742

                                                                       
Query: 543 tgaactttatgattttcatgtctcagccttctgaaggcaacataagtggtaagaagtagt 602
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 743 tgaactttatgattttcatgactcagccttctgaaggcaacataagtggtaagaagtagt 802

                                                                       
Query: 603 caaatactggattctttttttttaaacatgtgtgccttctcccacagtgcatgtgtgcat 662
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 803 caaatactggattctttttttttaaacatgtgtgccttctcccacagtgcatgtgtgcat 862

                                                        
Query: 663 gcgcatgcatatgcaggtatgtgtgtaagtccctagccctctcta 707
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 863 gcgcatgcatatgcaggtatgtgtgtaagtccctagccctctcta 907


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 707
Length of database: 1107
Length adjustment: 10
Effective length of query: 697
Effective length of database: 1097
Effective search space:   764609
Effective search space used:   764609
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)

Query= MSMg01no298_e19.g1 MSMg01no298_e19.g1 CHROMAT_FILE:
MSMg01no298_e19.g1 PHD_FILE: MSMg01no298_e19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:34:57 2005
         (622 letters)



>mm_chr7_108018607_108019628
          Length = 1022

 Score = 1000 bits (517), Expect = 0.0
 Identities = 553/571 (96%), Gaps = 13/571 (2%)
 Strand = Plus / Minus

                                                                        
Query: 63   cccatttcaaaacaaaatggttctacatggcaagacacacacacacaaagggagaaagtg 122
            ||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||
Sbjct: 1022 cccatttcaaaacaaaatggttctacatggcaag--acacacacacaaagggagaaagtg 965

                                                                        
Query: 123  taggtgtgtgcttttattaactcgcgtgcatccctc--gggtctgctgggtcttcaacac 180
            | ||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||
Sbjct: 964  ttggtgtgtgcttttattaactcgcgtgcatccctcaggggtctgctgggtcttcaacac 905

                                                                        
Query: 181  cacaggacatgtacaggacatcttgctagcagcattttcgtgaggagacggttgtgcctg 240
            |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 904  cacaggacgtgtacaggacatcttgctagcagcattttcgtgaggagacggttgtgcctg 845

                                                                        
Query: 241  tgtgga------gat---atgtaaggaacacgggctttgcatggaacggcttctctttgg 291
            ||||||      |||   ||| ||||||||| ||||||||||||||||||||||||||||
Sbjct: 844  tgtggaattcaggatgaaatggaaggaacacaggctttgcatggaacggcttctctttgg 785

                                                                        
Query: 292  aatcttgtctgatagcagccatgtgaccaggccaagttatttccttctcagtaatggggt 351
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 784  aatcttgtctgatagcagccatgtgaccaggccaagttatttccttctcagtaatggggt 725

                                                                        
Query: 352  ctgataacctcttttcccctacaggatggttggctagtgcatgtagttcttgaaatgcaa 411
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 724  ctgataacctcttttcccctacaggatggttggctagtgcatgtagttcttgaaatgcaa 665

                                                                        
Query: 412  agaggtccatttctggcccttaaatctaaagggtgcctgcgtctggagacctgagttggc 471
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 664  agaggtccatttctggcccttaaatctaaagggtgcctgcgtctggagacctgagctggc 605

                                                                        
Query: 472  ggtcagagcccagtgatctacatgttgaaggcccacctcaggctcctccccgctgccact 531
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 604  ggtcagagcccagtgatctacatgttgaaggcccacctcaggctcctccccgctgccact 545

                                                                        
Query: 532  agtccagttatttgcatttctgacagtggctgccacctttagtgcttcagtcatttctgc 591
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 544  agtccagttatttgcatttctgacagtggctgccacctttagtgcttcagtcatttctgc 485

                                           
Query: 592  tactccaggatttctgcctcaacagaggccc 622
            |||||||||||||||||||||||||||||||
Sbjct: 484  tactccaggatttctgcctcaacagaggccc 454


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 5
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 622
Length of database: 1022
Length adjustment: 10
Effective length of query: 612
Effective length of database: 1012
Effective search space:   619344
Effective search space used:   619344
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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