BAC Information

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BAC

Clone NameMSMg01-298H11
Chromosome7 (Build37)
Map Location 5,976,780 - 5,977,276
singlet/doubletsinglet
Overlap genenone
Upstream gene6430526N21Rik, 4632433K11Rik, Zfp784, Zfp580, Ccdc106, U2af2, Epn1, Rfpl4, Rasl2-9, EG665126, V1rd5, V1rd3, EG665150, Nlrp2, EG272350, V1rd4, EG665163, V1rd10, EG630071, EG665255, EG636697, EG636705, LOC636731, LOC673215, V1rd2, LOC100041627, LOC100041637, V1rd1, LOC100041647, V1rd11, LOC100041666, V1rd6, EG384525, EG269859
Downstream geneNlrp4c, Zfp787, Zfp444, Galp, Zfp371, EG627821, Zfp667, Zfp583, LOC100042467, LOC100042459, Zfp78, Zfp28, LOC100042450, Olfr1344, GA_x5J8B7W3DQU-679632-679375, Olfr1336, Olfr1346, Olfr5, Olfr1347, Olfr1348, Olfr1349, LOC665328, Olfr1350, Zim2, Zim1, Peg3, Usp29, LOC627961, Aurkc
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-298H11.T7 (MSMg01no298_h11.b1)MSMg01-298H11.TJ (MSMg01no298_h11.g1)
ACCAG425511AG425512
length744744
length of high quality
(start - end)
574 (71 - 644)621 (70 - 690)
definitionCHROMAT_FILE: MSMg01no298_h11.b1 PHD_FILE: MSMg01no298_h11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:35:10 2005CHROMAT_FILE: MSMg01no298_h11.g1 PHD_FILE: MSMg01no298_h11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:35:10 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
CAATXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAAAGAGGATCCGCGG
AATTCTCAATTTACGAAACTCAAATGTTCAACATCCTTAGTCATCAGGGA
AATGCAAATCAAAACAACCCTGAGATTCCACCTCACACCTGTCAGAATGG
CTAAGATCAAAAACTCAGGTGACAGCAGATGCTGGTGAGAATGTGGAGAA
AGAGGAACACTCCTCCATTGCCTGTGGGATTGCAAGCTGGTTCAACCACT
CTTAAAATCAGTCTGACGGTTCCTCTGAAAATTGGACAAAGTATTTCCTG
AGAACCCATGCTTGTGTTTTTGACTGATGTGCAGTTAAGCATAATCAAAT
TGATGATTATGGCATCCAACATAAATATCAAAGAAACACCCACTTAATGC
ACTTATATGAGACACATGCCCCCAACACTGCTTTTTATTACATTATTATT
TGTTGAGATAATCTTATATAGGTAATCAGTTACATTATTAATGTACACAT
TAACACAATATAAAAATTAATATGCTAGCTATGACCATGTTCAAATCTGT
AGGAGAAATATCTTTTTTAAAAAGATGTTTATTTTTTTTATTACGTATTT
ACCTCAATTACATTTCCAATGCTATCCCAAAAGTTCCCCCCCCATCCCCA
CTTCCACTCCCCAACCCACCCATTCCCAATTTTTGGCTCTGGCATTCCCC
TGTACTGGGGAATATAAAGCTTGCCTGTCCAATGGGCATCTCTN
CGATGCAGTGGGAGGCCTGGCGGCCGCCTGTTCGAAAAAGGGAGGTGACA
CTATAGATTTTCCCGCGGAATTCCAGGGCCAAGAAGAAGGAGAGGTGGGT
TGGGGAGCAGGGCGTTGGCAATATATAGGGGACTTTTGTGATAGCATTTG
AAATGTAAATGAAGAAAATATCTAATAAAAAAAAGAATGAGGATATCCCA
TTTTCACTAGAGTGACTCTTTAAGGCAGGTCCGCTCAGGAGCACACAGGC
TGCAGAAGCAGCAGAGCAGATGAGTTAGGGTCCTACGGGCCTATATTTGC
AGCCAGGAGGTGGGGCTGATCCTCATCCCTCTGTGCACCTTCCCTGTCAG
GGGAGAGCTTGCCTCCAGGAAGTGTCTGACCCTAGGACTCGAGTGAGGTC
CCTATTTTCTCTCTGGTGACCCTCTAAGGCCAGTCCACTCAGGAGCACAC
AGGCTGAAGATGCAGCTGAGCAGCTGGAACACGGTCCTATGGGCTTACAT
CCACAGCCAGGAGGTGAGGCTGTTCTACAGCCCTCTGTGTACTGGTCTTA
CCAGGAGAGAACTCTTCTCTAAGGAGTGCTGACACAGGCTTACAACCCCC
ACAGGAATAAGAAGCTCCATCCAGAGACAGCAGGAATATCCAACACTAGA
GACTACTGGATGGCAAAAGGAAAATGCAAGAATCTTTCCAACAGACACCA
AGACTACTTGGCACCATCAAAATCCAGTACTCCCAACATAGTGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no298_h11.b1 MSMg01no298_h11.b1 CHROMAT_FILE:
MSMg01no298_h11.b1 PHD_FILE: MSMg01no298_h11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:35:10 2005
         (574 letters)



>mm_chr7_5976350_5977322
          Length = 973

 Score =  862 bits (446), Expect = 0.0
 Identities = 485/498 (97%), Gaps = 1/498 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   caaatgttcaacatccttagtcatcagggaaatgcaaatcaaaacaaccctgagattcca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 927 caaatgttcaacatccttagtcatcagggaaatgcaaatcaaaacaaccctgagaatcca 868

                                                                       
Query: 61  cctcacacctgtcagaatggctaagatcaaaaactcaggtgacagcagatgctggtgaga 120
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 867 cctcacaccagtcagaatggctaagatcaaaaactcaggtgacagcagatgctggtgaga 808

                                                                       
Query: 121 atgtggagaaagaggaacactcctccattgcctgtgggattgcaagctggttcaaccact 180
           ||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 807 atgtgtagaaagaggaacactcctccattgccggtgggattgcaagctggttcaaccact 748

                                                                       
Query: 181 cttaaaatcagtctgacggttcctctgaaaattggacaaagtatttcctgagaacccatg 240
           || ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 747 ctgaaaatcagtctgacggttcctctgaaaattggacaaagtatttcctgaggacccatg 688

                                                                       
Query: 241 cttgtgtttttgactgatgtgcagttaagcataatcaaattgatgattatggcatccaac 300
           |||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||
Sbjct: 687 cttgtgtttttgactgatgtgcagttaaacataatcaaattgatgattatggcacccaac 628

                                                                       
Query: 301 ataaatatcaaagaaacacccacttaatgcacttatatgagacacatgcccccaacactg 360
           |||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct: 627 ataaatatcaaagaaacacccactgagtgcacttatatgagacacatgcccccaacactg 568

                                                                       
Query: 361 ctttttattacattattatttgttgagataatcttatataggtaatcagttacattatta 420
           |||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 567 cttttt-ttacattattatttattgagataatcttatataggtaatcagttacattatta 509

                                                                       
Query: 421 atgtacacattaacacaatataaaaattaatatgctagctatgaccatgttcaaatctgt 480
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 508 atgtacacattaacacaatatgaaaattaatatgctagctatgaccatgttcaaatctgt 449

                             
Query: 481 aggagaaatatctttttt 498
           ||||||||||||||||||
Sbjct: 448 aggagaaatatctttttt 431


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 574
Length of database: 973
Length adjustment: 10
Effective length of query: 564
Effective length of database: 963
Effective search space:   543132
Effective search space used:   543132
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)