Query= MSMg01no298_j07.b1 MSMg01no298_j07.b1 CHROMAT_FILE:
MSMg01no298_j07.b1 PHD_FILE: MSMg01no298_j07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:35:18 2005
(554 letters)
>mm_chr7_127827514_127828468
Length = 955
Score = 1058 bits (547), Expect = 0.0
Identities = 553/555 (99%), Gaps = 1/555 (0%)
Strand = Plus / Plus
Query: 1 caacagagatgtaaccagacattaagtctaatgggcctgaatgtgttgtaggagaattgg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caacagagatgtaaccagacattaagtctaatgggcctgaatgtgttgtaggagaattgg 260
Query: 61 ttcacagagcatggacagaaggcaagaataatgagaaatcattaaaagaaggaattcaga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttcacagagcatggacagaaggcaagaataatgagaaatcattaaaagaaggaattcaga 320
Query: 121 aaaaaattgcccgtgtgttcattagattggtggcatctgccacagctcctcttaaaactg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaaaaattgcccgtgtgttcattagattggtggcatctgccacagctcctcttaaaactg 380
Query: 181 gtttaataatagtcacaaacatcagtccccactctctagcctagactgaccaaaacagtg 240
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 381 gtttaataatagtcacaaacatcagtccccactctctagcctagagtgaccaaaacagtg 440
Query: 241 tcatttttaaattctttgcatgataaatgtaggtttgtcttagagtcacttgcagtaaga 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tcatttttaaattctttgcatgataaatgtaggtttgtcttagagtcacttgcagtaaga 500
Query: 301 tgcctcagtaagatttggagcaagtagatttaggttttgattcttggaatctccatggtt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgcctcagtaagatttggagcaagtagatttaggttttgattcttggaatctccatggtt 560
Query: 361 tatggcatgtaactacccctcagctgtaaaataaaggtgaaatggttagttcaaaagatg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tatggcatgtaactacccctcagctgtaaaataaaggtgaaatggttagttcaaaagatg 620
Query: 421 att-attagctggtcatggtggccagttttggccaccactttggaggcagggaaggcaga 479
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 atttattagctggtcatggtggccagttttggccaccactttggaggcagggaaggcaga 680
Query: 480 gacaggcagatttcttgagttcaaggacagccagggctacacagagaaaccttgtgtcaa 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gacaggcagatttcttgagttcaaggacagccagggctacacagagaaaccttgtgtcaa 740
Query: 540 aaacaaaaaacaaaa 554
|||||||||||||||
Sbjct: 741 aaacaaaaaacaaaa 755
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 554
Length of database: 955
Length adjustment: 10
Effective length of query: 544
Effective length of database: 945
Effective search space: 514080
Effective search space used: 514080
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no298_j07.g1 MSMg01no298_j07.g1 CHROMAT_FILE:
MSMg01no298_j07.g1 PHD_FILE: MSMg01no298_j07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:35:18 2005
(606 letters)
>mm_chr7_128022681_128023686
Length = 1006
Score = 1125 bits (582), Expect = 0.0
Identities = 600/606 (99%)
Strand = Plus / Minus
Query: 1 cccaaagtcctagctttaaggagtcttggcggaagccccaggccaagtcacttacgtcct 60
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 740 cccaaagtcctagctttaaggagccttggcggaagccccaggccaagtcacttacgtcct 681
Query: 61 gaagcactccctcattgctccacggccgaagggctgaaaagacaggacagagtcatcagt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 gaagcactccctcattgctccacggccgaagggctgaaaagacaggacagagtcatcagt 621
Query: 121 gcccacaccccacgatcccacgatcccctcgtcacagactgcccagtgggtgtcctgtac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 gcccacaccccacgatcccacgatcccctcgtcacagactgcccagtgggtgtcctgtac 561
Query: 181 tttacttcaatcccaataaccctaggctgtccctcgtgggcctcggtaccaaagccagag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 tttacttcaatcccaataaccctaggctgtccctcgtgggcctcggtaccaaagccagag 501
Query: 241 acgcctttcggcctggaggctgctgggattgagggcacccaataactcatctcaacccaa 300
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 acacctttcggcctggaggctgctgggattgagggcacccaataactcatctcaacccaa 441
Query: 301 tagaagaacggacaacgtggagcccagatgctggggaggggcagggtactaaaagggtgt 360
| |||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 440 tggaagaacggacagcgtggagcccagatcctggggaggggcagggtactaaaagggtgt 381
Query: 361 tttcatggccttggcttttcctctgtttcctggccaccatcaggtgagcaggcctcctct 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 tttcatggccttggcttttcctctgtttcctggccaccatcaggtgagcaggcctcctct 321
Query: 421 gccacgtgctccagccggaacgcactgcgctcacacaggcccaaagcaacagggtcaata 480
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 gccacgtgctccagccagaacgcactgcgctcacacaggcccaaagcaacagggtcaata 261
Query: 481 ggccacgaactgaaagttcggaaaccacaagccaaaatgaacctttaaaatgactatgta 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 ggccacgaactgaaagttcggaaaccacaagccaaaatgaacctttaaaatgactatgta 201
Query: 541 agccaggtgtagtgatgcacacctttaatcccagcactcggtaggcagtgaaaggaggag 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 200 agccaggtgtagtgatgcacacctttaatcccagcactcggtaggcagtgaaaggaggag 141
Query: 601 cctggt 606
||||||
Sbjct: 140 cctggt 135
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 606
Length of database: 1006
Length adjustment: 10
Effective length of query: 596
Effective length of database: 996
Effective search space: 593616
Effective search space used: 593616
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
