BAC Information

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BAC

Clone NameMSMg01-299D22
Chromosome7 (Build37)
Map Location 28,925,597 - 28,925,796
singlet/doubletsinglet
Overlap gene9530053A07Rik
Upstream geneGm1450, Egln2, Rab4b, Mia1, Snrpa, Itpkc, Adck4, Numbl, Ltbp4, Shkbp1, Spnb4, Blvrb, EG668045, Sertad3, Sertad1, Prx, Hipk4, Pld3, 2310022A10Rik, Akt2, Ttc9b, Map3k10, C030039L03Rik, Zfp60, LOC100043229, LOC100043233, 4933426I21Rik, Zfp59, 4732475C15Rik, Prkcz2, 1700049G17Rik, EG668175, LOC100043771, Zfp780b, C130069I09Rik, LOC100043772, Psmc4, LOC100043774
Downstream geneFbl, Dyrk1b, Eid2, LOC434156, BC089491, Dll3, Timm50, Supt5h, Rps16, Plekhg2, Zfp36, Ixl, Paf1, Samd4b, 1700085B13Rik, Gmfg, Lrfn1, LOC624672, 1700028B04Rik, EG330496, Il28, Sycn, 1190020J12Rik, Pak4, C330005M16Rik, Fbxo27, Fbxo17, Mrps12, Sars2, EG624918, Nfkbib, Sirt2, 5830482F20Rik, Hnrpl, Ech1, Lgals4, Lgals7, Capn12, Actn4, Eif3s12, Map4k1, Ryr1, Rasgrp4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-299D22.T7 (MSMg01no299_d22.b1)MSMg01-299D22.TJ (MSMg01no299_d22.g1)
ACCAG426074AG426075
length772863
length of high quality
(start - end)
204 (34 - 237)154 (64 - 217)
definitionCHROMAT_FILE: MSMg01no299_d22.b1 PHD_FILE: MSMg01no299_d22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:36:07 2005CHROMAT_FILE: MSMg01no299_d22.g1 PHD_FILE: MSMg01no299_d22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:36:07 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCACATCTT
CTTGCCATCAAAAAGAGGTCTTGGTGCTCAGTAGATATTAGAATTTCCTA
GTTTTGTCCTTATGAAAGTTTAGAATTACTGACTTGTGTCTAAAGAATGG
ACCAGAGAGCAAGATAACAGGTGATGTGAAATGTCCGGTACAAAGTGAGC
ATTTGTGGTGGGGGTGGGGGGTGGAGATGCCCATTTANCCTCNAATACTG
ANAAAATGTCTGTCCACCCACACCACATCAACACCACACATGCTGAGTTC
CACTGGCAAAAATTTTTTTTTTTCAAAAGCCGCGCTGCCAGGCTGCCTCT
TCTCTGTTTCTTCTCCCCCCCCACCCCGCGTGTCTCTCCATTACTTCTTT
TTATACTTGCCCCCCCACCTGTTTGATGTGCTCATTCTATATTGCCCTAG
CTGCCCTGAGGGTCAAACTTCTCTTATTTCTTACTCATTGAGAACTTACG
CTTCCGGACCTTTTTTTCTCCCACCTTCCTTGTACTCCTTTTTTCTTTTC
TTTCCCCCTCTTCTCTTTTCCCCCTTTCCCTCTTTTTGTCCCCTTTTTTC
TTTCCCCCTTTTTCTCCCCTTTCACCTTCCCTCCCCCTTTTCCTTTTCTC
CCTTTCTACACATATCTTCTCTTTATCTTCCTCCCTCTCCTCTTTTTCCC
CAACTACCCCTTTCCCTTTTTTTCTTTTTCTATCCCCTNTTATTCATTCT
CCCTCCTTCGCTTTCCTATTTT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXTTTCTGTAGACCAGGTTGGACTCCAACTCACAGAGAA
CTGCCTGCCTCTTCTCCCTTCAGTGCTGGGATTAAAAGAACAACAGTGGA
CCAAAGCTTGCTGTAGGGATAGGATCCTGGGTGGAATGGGTTGTGGGTGG
AGGGAACGTGGTTTTTGNNATTTNTNCTNTTTTNTNNNTTTTTTTTTTTN
TTTTTTTTTTTTTTTTNTNTTTTNTCCTTTCTTTNCCCCCTTTTTTTTTT
CTCCCTCTTCTTTTTTTTTTCCTCCCCTCNNTTCCTTCCCTTCTTTCCCT
TTTTTTTTTTTTTTCTCCCCCCCCCCCCCCCCCTTTTTTTTTTTTTTTTT
TCTCTTCTTCTCCTTTTTCCCCCCCCCCCTTCNCCTCCAAATATAACCTC
TTTTCTCCCTCTTTTCTCCCTTTTTACCCATTCCACCTCCTCCCTTCTTA
TCTCTCTCCCCTCCTTTTCCCTTCTTTTTTNTTTTCCCTACCTCTTCTCT
CCCTTCCTTCTTCTCCTCCTCTTCTTTTTCCCCCTCTTTTTTTTCCCCTC
CTTCTTTCATCCTATTTTTCTTTTTTTCCTTCTCCCCCATTTTTTTTTCC
CACTTTATACCTCCCCTCCCTATCCCATTTCGCTTTTTCCCTTATTTTTT
TTCTCCTTCTATTCCCTCTTTCCCTTCTTCCTTTTTTCTTCCCCCCTTTT
TTCCCCCCTCCTTTTTCTCCTCCCCCTCTCTCCCCTAATTTGTCGTTCCC
CATTCTCCGTCTTTTCCCTTTTTTCTCCTCTTTCCCCCCCCTCTTCTTTT
TTTCCTCTTTCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no299_d22.b1 MSMg01no299_d22.b1 CHROMAT_FILE:
MSMg01no299_d22.b1 PHD_FILE: MSMg01no299_d22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:36:07 2005
         (204 letters)



>mm_chr7_28925393_28925996
          Length = 604

 Score =  344 bits (178), Expect = 2e-99
 Identities = 195/202 (96%), Gaps = 4/202 (1%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcacatcttcttg--ccatcaaaaagaggtcttggtgctcagtagatattagaatt 62
           ||||||||||||||  |  |  ||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcacatcttcagggtc--tcaaaaagaggtcttggtgctcagtagatattagaatt 262

                                                                       
Query: 63  tcctagttttgtccttatgaaagtttagaattactgacttgtgtctaaagaatggaccag 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 tcctagttttgtccttatgaaagtttagaattactgacttgtgtctaaagaatggaccag 322

                                                                       
Query: 123 agagcaagataacaggtgatgtgaaatgtccggtacaaagtgagcatttgtggtgggggt 182
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 agagcaaggtaacaggtgatgtgaaatgtccggtacaaagtgagcatttgtggtgggggt 382

                                 
Query: 183 ggggggtggagatgcccattta 204
           ||||||||||||||||||||||
Sbjct: 383 ggggggtggagatgcccattta 404


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 204
Length of database: 604
Length adjustment: 8
Effective length of query: 196
Effective length of database: 596
Effective search space:   116816
Effective search space used:   116816
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)