MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	MSMg01-299E02
Chromosome	7 (Build37)
Map Location	120,888,586 - 121,050,853
singlet/doublet	doublet
Overlap gene	Spon1
Upstream gene	Tead1, 4632411J06Rik, LOC434227, Arntl, A630005I04Rik, Btbd10, Pth, LOC100042736, Mlstd2, EG434228
Downstream gene	Rras2, LOC668451, Copb1, Psma1, 4933406I18Rik, Pde3b, Cyp2r1, Calca, LOC100043295, Calcb, Insc
Link	Open Mouse BAC browser

Click to get alignment info.

name	Tead1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:21676 MGI:101876
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	4632411J06Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:78748 MGI:1925998
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC434227 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:434227
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 256 ESTs, 9 Proteins pseudo : _no_value

name	Arntl (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:11865 MGI:1096381
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	A630005I04Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:320743 MGI:2444645
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Btbd10 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:68815 MGI:1916065
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Pth (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:19226 MGI:97799
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100042736 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100042736
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 Proteins pseudo : _no_value

name	Mlstd2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:67420 MGI:1914670
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 2 mRNAs

name	EG434228 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:434228 MGI:3645703
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 ESTs

name	Spon1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:233744 MGI:2385287
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Rras2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:66922 MGI:1914172
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC668451 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:668451
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 ESTs, 4 Proteins pseudo : _no_value

name	Copb1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:70349 MGI:1917599
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Psma1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:26440 MGI:1347005
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	4933406I18Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:71045 MGI:1918295
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA

name	Pde3b (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:18576 MGI:1333863
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Cyp2r1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:244209 MGI:2449771
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Calca (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:12310 MGI:2151253
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 2 mRNAs

name	LOC100043295 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100043295
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 16 mRNAs, 1926 ESTs, 11 Proteins

name	Calcb (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:116903 MGI:2151254
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Insc (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:233752 MGI:1917942
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Tead1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118130427 GeneID:21676 MGI:101876
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : TEA domain family member 1 transcript_id : NM_009346.2

name	4632411J06Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:125988386 GeneID:78748 MGI:1925998
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 4632411J06 gene transcript_id : NM_175279.3

name	Arntl (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118131159 GeneID:11865 MGI:1096381
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : aryl hydrocarbon receptor nuclear translocator-like transcript_id : NM_007489.3

name	A630005I04Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142366304 GeneID:320743 MGI:2444645
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA A630005I04 gene transcript_id : NM_177248.3

name	Btbd10 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118130947 GeneID:68815 MGI:1916065
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : BTB (POZ) domain containing 10 transcript_id : NM_133700.2

name	Pth (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:134032033 GeneID:19226 MGI:97799
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : parathyroid hormone transcript_id : NM_020623.2

name	Mlstd2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:74096447 GeneID:67420 MGI:1914670
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : male sterility domain containing 2 transcript_id : NM_026143.2

name	Mlstd2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:68448550 GeneID:67420 MGI:1914670
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : male sterility domain containing 2 transcript_id : NM_027379.2

name	EG434228 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94380959 GeneID:434228 MGI:3645703
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 ESTs product : predicted gene, EG434228 transcript_id : XM_001001457.1

name	Spon1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:21704173 GeneID:233744 MGI:2385287
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : spondin 1, (f-spondin) extracellular matrix protein transcript_id : NM_145584.1

name	Rras2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:13399307 GeneID:66922 MGI:1914172
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : related RAS viral (r-ras) oncogene homolog 2 transcript_id : NM_025846.1

name	Copb1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118130810 GeneID:70349 MGI:1917599
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : coatomer protein complex, subunit beta 1 transcript_id : NM_033370.3

name	Psma1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:124377996 GeneID:26440 MGI:1347005
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : proteasome (prosome, macropain) subunit, alpha type 1 transcript_id : NM_011965.2

name	4933406I18Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149257671 GeneID:71045 MGI:1918295
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 4933406I18 gene transcript_id : XM_900230.3

name	Pde3b (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:112983647 GeneID:18576 MGI:1333863
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : phosphodiesterase 3B, cGMP-inhibited transcript_id : NM_011055.2

name	Cyp2r1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:34330187 GeneID:244209 MGI:2449771
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : cytochrome P450, family 2, subfamily r, polypeptide 1 transcript_id : NM_177382.3

name	Calca (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141802759 GeneID:12310 MGI:2151253
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : calcitonin/calcitonin-related polypeptide, alpha transcript_id : NM_001033954.2

name	Calca (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:33468844 GeneID:12310 MGI:2151253
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : calcitonin/calcitonin-related polypeptide, alpha transcript_id : NM_007587.1

name	LOC100043295 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149257748 GeneID:100043295
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 16 mRNAs, 1926 ESTs, 11 Proteins product : similar to ribosomal protein L5 transcript_id : XM_001479452.1

name	Calcb (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:16930814 GeneID:116903 MGI:2151254
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : calcitonin-related polypeptide, beta transcript_id : NM_054084.1

name	Insc (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:31343387 GeneID:233752 MGI:1917942
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : inscuteable homolog (Drosophila) transcript_id : NM_173767.2

name	Tead1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6678275 GeneID:21676 MGI:101876
definition	GO_component : GO:0005634 - nucleus [Evidence IEA]; GO:0005667 - transcription factor complex [Evidence IDA] [Evidence IC] GO_function : GO:0003677 - DNA binding [Evidence IDA]; GO:0005515 - protein binding [Evidence IPI]; GO:0003700 - transcription factor activity [Evidence IDA]; GO:0016563 - transcriptional activator activity [Evidence IGI] GO_process : GO:0045944 - positive regulation of transcription from RNA polymerase II promoter [Evidence IGI]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IDA]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 product : TEA domain family member 1 protein_id : NP_033372.1

name	4632411J06Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:125988387 GeneID:78748 MGI:1925998
definition	GO_process : GO:0007165 - signal transduction [Evidence IEA] codon_start : 1 product : hypothetical protein LOC78748 protein_id : NP_780488.2

name	A630005I04Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:28893309 GeneID:320743 MGI:2444645
definition	codon_start : 1 product : hypothetical protein LOC320743 protein_id : NP_796222.1

name	Arntl (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6680732 GeneID:11865 MGI:1096381
definition	GO_component : GO:0005634 - nucleus [Evidence IDA] GO_function : GO:0003677 - DNA binding [Evidence IPI]; GO:0005515 - protein binding [Evidence IPI]; GO:0004872 - receptor activity [Evidence IEA]; GO:0003700 - transcription factor activity [Evidence IDA]; GO:0030528 - transcription regulator activity [Evidence IEA]; GO:0000155 - two-component sensor activity [Evidence IEA] GO_process : GO:0007623 - circadian rhythm [Evidence IMP] [Evidence IDA]; GO:0000060 - protein import into nucleus, translocation [Evidence IDA]; GO:0042176 - regulation of protein catabolism [Evidence IDA]; GO:0045449 - regulation of transcription [Evidence IEA]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IDA]; GO:0006350 - transcription [Evidence IEA]; GO:0000160 - two-component signal transduction system (phosphorelay) [Evidence IEA] codon_start : 1 product : aryl hydrocarbon receptor nuclear translocator-like protein_id : NP_031515.1

name	Btbd10 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:30794234 CCDS:CCDS21755.1 GeneID:68815 MGI:1916065
definition	GO_component : GO:0016020 - membrane [Evidence IEA]; GO:0005634 - nucleus [Evidence IEA]; GO:0008076 - voltage-gated potassium channel complex [Evidence IEA] GO_function : GO:0005515 - protein binding [Evidence IEA]; GO:0005249 - voltage-gated potassium channel activity [Evidence IEA] GO_process : GO:0006813 - potassium ion transport [Evidence IEA] codon_start : 1 product : K+ channel tetramerization protein protein_id : NP_598461.1

name	Pth (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:10181174 CCDS:CCDS21756.1 GeneID:19226 MGI:97799
definition	GO_component : GO:0005615 - extracellular space [Evidence IDA] GO_function : GO:0005179 - hormone activity [Evidence IDA] GO_process : GO:0006874 - calcium ion homeostasis [Evidence ISS]; GO:0007189 - G-protein signaling, adenylate cyclase activating pathway [Evidence ISS]; GO:0007595 - lactation [Evidence IEA] codon_start : 1 product : parathyroid hormone protein_id : NP_065648.1

name	Mlstd2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:74096448 GeneID:67420 MGI:1914670
definition	GO_component : GO:0005777 - peroxisome [Evidence IDA] GO_function : GO:0050062 - long-chain-fatty-acyl-CoA reductase activity [Evidence IDA] GO_process : GO:0010025 - wax biosynthesis [Evidence TAS] codon_start : 1 product : male sterility domain containing 2 protein_id : NP_080419.2

name	Mlstd2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:68448551 GeneID:67420 MGI:1914670
definition	GO_component : GO:0005777 - peroxisome [Evidence IDA] GO_function : GO:0050062 - long-chain-fatty-acyl-CoA reductase activity [Evidence IDA] GO_process : GO:0010025 - wax biosynthesis [Evidence TAS] codon_start : 1 product : male sterility domain containing 2 protein_id : NP_081655.2

name	EG434228 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:94380960 GeneID:434228 MGI:3645703
definition	codon_start : 1 product : hypothetical protein LOC434228 protein_id : XP_001001457.1

name	Spon1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:21704174 CCDS:CCDS21757.1 GeneID:233744 MGI:2385287
definition	GO_component : GO:0005578 - extracellular matrix (sensu Metazoa) [Evidence IEA] GO_function : GO:0005515 - protein binding [Evidence IEA] GO_process : GO:0007275 - development [Evidence IEA] codon_start : 1 product : spondin 1, (f-spondin) extracellular matrix protein protein_id : NP_663559.1

name	Rras2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:13399308 CCDS:CCDS21758.1 GeneID:66922 MGI:1914172
definition	GO_component : GO:0005622 - intracellular [Evidence IDA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0005525 - GTP binding [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI] GO_process : GO:0050875 - cellular physiological process [Evidence IPI] [Evidence IDA]; GO:0007265 - Ras protein signal transduction [Evidence IDA] codon_start : 1 exception : mismatches in translation product : related RAS viral (r-ras) oncogene homolog 2 protein_id : NP_080122.1

name	Copb1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:15426055 CCDS:CCDS21759.1 GeneID:70349 MGI:1917599
definition	GO_component : GO:0030126 - COPI vesicle coat [Evidence IEA]; GO:0005794 - Golgi apparatus [Evidence ISS] [Evidence IDA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0005488 - binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI] GO_process : GO:0006605 - protein targeting [Evidence IEA]; GO:0015031 - protein transport [Evidence IEA]; GO:0006810 - transport [Evidence IEA] codon_start : 1 product : coatomer protein complex, subunit beta 1 protein_id : NP_203534.1

name	Psma1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:33563282 GeneID:26440 MGI:1347005
definition	GO_component : GO:0005829 - cytosol [Evidence IEA]; GO:0005839 - proteasome core complex (sensu Eukaryota) [Evidence IEA]; GO:0043234 - protein complex [Evidence IEA] GO_function : GO:0004175 - endopeptidase activity [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]; GO:0008233 - peptidase activity [Evidence IEA]; GO:0004298 - threonine endopeptidase activity [Evidence IEA] GO_process : GO:0006511 - ubiquitin-dependent protein catabolism [Evidence IEA] codon_start : 1 note : 20S proteasome subunit C2 product : proteasome (prosome, macropain) subunit, alpha type 1 protein_id : NP_036095.1

name	4933406I18Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149257672 GeneID:71045 MGI:1918295
definition	codon_start : 1 product : hypothetical protein LOC71045 protein_id : XP_905323.2

name	Pde3b (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:112983648 CCDS:CCDS21760.1 GeneID:18576 MGI:1333863
definition	GO_component : GO:0016020 - membrane [Evidence IEA] GO_function : GO:0004114 - 3',5'-cyclic-nucleotide phosphodiesterase activity [Evidence IEA]; GO:0003824 - catalytic activity [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA] GO_process : GO:0031018 - endocrine pancreas development [Evidence IDA]; GO:0042593 - glucose homeostasis [Evidence IDA]; GO:0050796 - regulation of insulin secretion [Evidence IDA]; GO:0007165 - signal transduction [Evidence IEA] codon_start : 1 product : phosphodiesterase 3B, cGMP-inhibited protein_id : NP_035185.2

name	Cyp2r1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:34330188 CCDS:CCDS21761.1 GeneID:244209 MGI:2449771
definition	GO_component : GO:0005575 - cellular_component [Evidence ND]; GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO:0016020 - membrane [Evidence IEA]; GO:0005792 - microsome [Evidence IEA] GO_function : GO:0020037 - heme binding [Evidence IEA]; GO:0005506 - iron ion binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0004497 - monooxygenase activity [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]; GO:0030343 - vitamin D3 25-hydroxylase activity [Evidence IDA] GO_process : GO:0006118 - electron transport [Evidence IEA]; GO:0042359 - vitamin D metabolism [Evidence IDA] codon_start : 1 note : cytochrome P450, 2r1 product : cytochrome P450, family 2, subfamily r, polypeptide 1 protein_id : NP_796356.2

name	Calca (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:76880463 CCDS:CCDS21762.1 GeneID:12310 MGI:2151253
definition	GO_component : GO:0005576 - extracellular region [Evidence IDA] [Evidence TAS]; GO:0005622 - intracellular [Evidence IDA] GO_function : GO:0001635 - calcitonin gene-related polypeptide receptor activity [Evidence IDA]; GO:0005179 - hormone activity [Evidence IEA]; GO:0005102 - receptor binding [Evidence TAS] [Evidence IDA] GO_process : GO:0007631 - feeding behavior [Evidence IDA]; GO:0006954 - inflammatory response [Evidence IDA]; GO:0045986 - negative regulation of smooth muscle contraction [Evidence IDA]; GO:0007218 - neuropeptide signaling pathway [Evidence IDA] codon_start : 1 note : isoform Cgrp preproprotein is encoded by transcript variant 2; alpha CGRP; calcitonin/alpha CGRP; calcitonin gene-related peptide product : calcitonin isoform Cgrp preproprotein protein_id : NP_001029126.1

name	Calca (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:33468845 CCDS:CCDS21763.1 GeneID:12310 MGI:2151253
definition	GO_component : GO:0005576 - extracellular region [Evidence IDA] [Evidence TAS]; GO:0005622 - intracellular [Evidence IDA] GO_function : GO:0001635 - calcitonin gene-related polypeptide receptor activity [Evidence IDA]; GO:0005179 - hormone activity [Evidence IEA]; GO:0005102 - receptor binding [Evidence TAS] [Evidence IDA] GO_process : GO:0007631 - feeding behavior [Evidence IDA]; GO:0006954 - inflammatory response [Evidence IDA]; GO:0045986 - negative regulation of smooth muscle contraction [Evidence IDA]; GO:0007218 - neuropeptide signaling pathway [Evidence IDA] codon_start : 1 exception : mismatches in translation note : isoform Calca preproprotein is encoded by transcript variant 1; alpha CGRP; calcitonin/alpha CGRP; calcitonin gene-related peptide product : calcitonin isoform Calca preproprotein protein_id : NP_031613.1

name	LOC100043295 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149257749 GeneID:100043295
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001479502.1

name	Calcb (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:16930815 CCDS:CCDS21764.1 GeneID:116903 MGI:2151254
definition	codon_start : 1 exception : mismatches in translation product : calcitonin-related polypeptide, beta protein_id : NP_473425.1

name	Insc (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:30424627 GeneID:233752 MGI:1917942
definition	GO_function : GO:0005488 - binding [Evidence IEA] codon_start : 1 product : inscuteable protein_id : NP_776128.1

name	LOC100042736 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100042736
definition	number : 1 pseudo : _no_value

name	LOC100042736 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100042736
definition	number : 2 pseudo : _no_value

name	LOC434227 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149257669 GeneID:434227
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 256 ESTs, 9 Proteins product : similar to ribosomal protein L7a pseudo : _no_value transcript_id : XR_033835.1

name	LOC668451 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149257670 GeneID:668451
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 ESTs, 4 Proteins product : similar to hCG1777176 pseudo : _no_value transcript_id : XR_033867.1

clone name	MSMg01-413C09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-383I09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-339G01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-190H19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-300E21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-133E14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-427G16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-174B10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-468P02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-119D24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-363E24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-068L15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-088C20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-311M04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-421D02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-476C19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-261I15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-466J23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-327K11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-067O01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-142H12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-168L09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-047A16
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-294H20
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-451M16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-121A10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-174G01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-234I06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-217N15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-108E02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-486L12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-330E24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-407P17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-373H23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-465N01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-414I07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-499M01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-318G06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-410A19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-156H04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-366E22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-540M21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-388D16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-179B08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-471H08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-457M18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-497D16
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-468P22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-299E02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-199N07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-432P20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-408J03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-312A20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-129G17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-389H21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-326M10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-542F13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-397H03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-153F08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-194D08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-167K13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-446J10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-373K02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-268C03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-373D02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-134E03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-448E12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-057N22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-061L15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-321L04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-166P03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-478G02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-441N08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-185G05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-396G07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-504I17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-333I10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-127B14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-364G03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-530G08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-397P13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-378E03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-385B06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-292J09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-390E23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-211I16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-237N11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-427F18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-417I23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-151J11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-151K12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-385H21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-400O16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-451C19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-290K14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-510G12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-184C10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-151N24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-275I06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-153L24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-060F14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-179C02
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-140C21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-130C03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-158L23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-262D12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-139A02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-364E24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-079B06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-438I14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-026I11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-299O06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-023L09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-284D04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-172A06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-038I17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-120N09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-069L19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-137E20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-120D17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-290J10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-176O05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-252H19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-063I11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-264E06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-189C07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-287K05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-326K16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-089I24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-074B05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-083E21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-294I08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-344D01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-185K04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-113F23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-238L03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-321L14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-348I04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-058B06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-224A05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-122O04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-292A17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-292A13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-256E16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-273E13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-302C18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-320K21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-125E06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-226C18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-278C01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-315K08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-248M02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-222I21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-300G16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-130B16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-335L11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-043A20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-088A18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-238G01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-254J18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-303L09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-033D06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-301O02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-298K11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-117A08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-007H02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-257I22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-149P13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-073B07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-329G12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-118P11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-219F16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-270A20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-304O04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-017A15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-189N07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-085G20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-197L06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-219L12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-311K20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-107L09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-235C03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-173F07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-073I11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-245K04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-245N04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-260M10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-328L14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-046I21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-336K21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-115K10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-341C03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-125F01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-050D22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-231E23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-222B14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-304D13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-150C10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-329J16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-188H04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-008C09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-248O11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-281F15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-181D07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-205L04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-235P12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-263E23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-237K08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-186M01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-338J23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-226M05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-194F22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-277P09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-077D14
singlet/doublet	doublet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	MSMg01-299E02.T7 (MSMg01no299_e02.b1)	MSMg01-299E02.TJ (MSMg01no299_e02.g1)
ACC	AG426082	AG426083
length	833	788
length of high quality (start - end)	127 (96 - 222)	244 (74 - 317)
definition	CHROMAT_FILE: MSMg01no299_e02.b1 PHD_FILE: MSMg01no299_e02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:36:08 2005	CHROMAT_FILE: MSMg01no299_e02.g1 PHD_FILE: MSMg01no299_e02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:36:08 2005
singlet/doublet	doublet	doublet
BLAST hit	unique	unique
Map location.	(120,888,586 - 120,888,712)	(121,050,610 - 121,050,853)
sequence	ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGTGCAANGTTCGGAAN NNANNTGGNCATACGTCCACCGCCTGNGNNNACAAAGNCNCTTGGATAAT AGCTGGNCCAGAGCAAGCATTACTGTGTGTGGTAGGCAAGTTCAAGCTCA GCCCCCCAAGATTCCTGTTCCCCATCAGGAAGGTCCCTTGTAATCTCTAC ACTGGCCTCCAACTGTGGGTAGGTCTTGGGAATGTAACTGTGCTTTTCCC CTGTTGAGACACTTTGGCAAGGGACCTCCCAACTGCCCCTGCCTTCCCAA TGACCACACAAGAACCCTTTTTATTTTTATANGAACNANGNGGCGGGGAA AGAAAAAAAAATTTTTTTTTCCCCCCCCCCCCCCCGTTTTTTTTTTTTTT TTTTTTTTTNNNNTTTTNNNNNNNGTTGTGAAAAAAAAAAAAAAAAAAAT GGGGGGGGGGGGGGGGGTTTTTTTTTTTTTCTTTTTCTTCATTTACCTAT CACCCTTCCTCACACTCATCATTTCTTCTCCACCCCCACCACATCCCCCG CACATCAAATTACCTCAAACCACCCCCCTTGCCTTTCCTCTCACAAACAC AACAATCCTCACCCCCATATATCCACCCTCCCCCGGCCAGTATACTCTCG TGCGCGCGTCCCGCAAAACAATACACCTAGGCCCTCGCCGCGCGTGGCGT AAAAAAAAAATCTCGCTGCCTCATACACCCTACCATCCAACCAACAACCC CCCTTTTAACTAGTCTTATTTCTATCCCTCCGTTAAACTACTCCCCCACA CCACCCCTAACCTCCCGTCGAATAAAAATAAAT	ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXTACCCCGCAACTCTAAGAGGAGTGAGGATTCAGTGTGACACC AGAGTTCCCAGGCTTCATCTATTGCTGGCTATTACCTCCTTGTTAGATCA GGAACAGGAAGATCAGGGACAAGACTAGGTTGCTAATCTCTTGTAAAAAA TTTTCCAGGTATTGCAATTTGCTGCTTCTAGAACTCAGGGTTGGACTGAG TTGACAAAAGTTTTCATTACCAACTAATTAAATAAACAAACAAACATTCC CCCACTAAGACTTAGTCTTTGATTTTTCGTGCTATGGNCCCACTTCCCAT TCACTCTCTGTTTTTTGTTTTTGCACCCCCCCCCCCCCAGCCTCCTCATA TTTCGTGTATTATGGCCCCCCCACCGTAACTGACAAAGAACCTATGATCT GCGGGCCGGGAGAAACTCATCCTTCCTTAAATTGCTCCTTATTAGGTGTT TGCTCACCACAACAGGACCAGCACCCAGTATAAGCATCCCCCTACCTCCA GGCTTTCTGGGTTGAAAACTCACGTCTTTCTGTCCCACACAGCTCAGGTT TCCAAAACCGTTAAGATGTTTGCTCTTCATCAGTGCAACCCTACGAACTC AATGAAAAAAATAAAGTCCTTGTAAATTGTGTTTGAAAAACAATTTTAAT ACTCCTCCTTTGCCCACTTGAAACCCCCTTCTATTCCTCGCCAATTTGGG GGCGATCTTTGGGCTGCTCCTTACAAATCCTTGGGTAN
quality values	Open. Hide. 8 8 8 9 21 24 39 35 36 36 39 41 35 27 19 16 11 11 10 28 28 28 13 12 9 9 9 10 10 9 9 9 9 6 6 6 6 6 6 3 0 3 6 9 9 9 19 18 3 0 0 0 3 0 0 3 18 3 0 3 7 7 7 7 7 9 9 10 8 8 8 8 9 9 9 3 0 3 0 0 0 3 18 19 19 21 3 0 3 0 3 14 7 9 9 9 19 23 44 47 42 41 39 25 25 3 0 3 21 17 27 30 37 37 37 32 32 24 21 23 28 24 32 32 39 43 43 39 36 36 40 34 29 25 24 28 33 37 42 39 43 43 43 43 57 48 48 36 44 23 28 28 44 44 57 59 54 54 47 50 42 42 42 41 47 47 47 47 48 48 48 48 48 48 44 44 23 23 18 32 34 44 47 43 32 44 42 36 36 44 44 46 44 44 44 46 44 39 39 41 39 43 46 43 46 46 48 48 48 48 43 44 43 43 33 32 37 39 28 28 13 13 14 14 18 21 21 13 13 12 12 19 19 23 20 20 20 19 25 13 13 13 13 13 11 13 15 15 16 13 10 9 9 9 9 9 10 12 15 13 9 9 9 9 10 10 10 11 11 11 11 12 12 18 12 11 10 10 10 10 10 10 8 8 8 8 8 8 9 9 9 9 9 9 8 8 10 10 10 9 10 10 10 10 11 12 12 13 11 11 8 8 8 6 6 8 8 13 13 13 12 7 7 7 11 11 15 10 9 9 3 0 3 8 8 3 0 3 0 3 0 3 8 8 8 8 8 10 8 10 7 7 7 10 19 25 28 18 10 10 8 9 10 16 20 19 19 12 9 8 8 10 11 16 13 9 9 8 15 15 26 32 16 10 8 8 8 10 11 17 17 10 8 8 8 8 9 15 17 19 10 9 9 13 8 10 10 13 3 0 0 0 0 3 10 9 3 0 0 0 0 0 0 0 3 6 8 8 8 8 8 8 11 19 16 19 19 21 24 26 26 21 21 19 16 14 11 13 10 9 9 11 11 20 22 30 28 28 17 17 16 16 14 11 12 12 10 9 9 10 10 9 9 9 9 11 9 9 7 8 8 8 8 10 8 8 8 6 8 6 6 6 6 6 8 8 8 8 8 8 8 6 8 10 10 12 8 8 8 8 8 8 10 10 8 8 8 7 7 8 11 11 8 10 8 8 8 9 12 15 14 14 16 14 12 10 10 8 8 8 8 8 8 8 8 10 10 10 6 6 8 8 8 8 8 8 8 9 6 12 8 6 8 8 6 6 8 8 8 9 9 9 12 16 12 11 11 15 8 8 8 8 8 8 10 11 13 9 8 8 8 8 8 8 10 15 13 16 16 15 15 13 10 8 8 10 10 10 10 8 7 6 8 10 13 10 8 6 6 8 8 8 8 6 6 8 8 9 9 9 12 10 9 9 9 9 9 8 8 6 6 6 6 8 8 10 10 8 8 8 8 6 8 6 7 8 6 6 6 6 10 9 9 10 10 6 13 7 9 13 6 6 8 8 8 8 10 10 10 11 10 10 10 9 9 9 9 9 9 8 8 6 6 8 8 9 10 10 10 10 16 17 15 25 22 24 25 14 11 10 8 8 8 11 9 10 9 9 9 9 8 8 8 10 10 12 6 6 8 8 9 8 8 10 10 15 13 10 10 9 8 10 8 10 9 9 14 22 15 19 15 11 11 15 10 10 10 8 8 8 6 6 8 8 8 8 10 8 9 9 13 18 8 8 6 7 6 6 6 8 8 8 8 8 8 10 13 8 8 8 7 7 10 8 8 8 8 8 8 8 10 10 9 9 10 13 11 10 10 10 10 11 11 12 8 8 8 8 10 8 8 8 8 11 21 17 21 11 10 8 8 8 8	Open. Hide. 8 13 8 8 8 13 15 14 16 10 9 9 9 14 12 18 18 3 0 3 21 12 11 15 18 18 22 15 9 9 9 9 13 11 11 10 9 9 9 9 10 13 25 23 33 33 33 33 36 33 50 50 34 41 23 28 15 13 6 6 6 6 11 12 12 12 8 8 9 9 9 12 16 13 19 28 41 26 36 36 36 23 23 19 32 33 29 29 17 25 25 43 43 57 48 48 42 40 33 25 25 25 43 43 43 43 43 43 43 32 32 35 34 21 21 18 25 25 31 37 47 43 42 39 30 30 32 37 39 39 46 46 57 57 57 54 54 54 57 44 59 46 59 59 68 51 51 51 47 47 50 50 57 57 48 48 48 57 57 41 36 36 36 36 33 39 33 33 42 48 48 43 43 43 43 43 48 57 59 59 48 48 48 48 57 43 57 46 46 46 39 39 39 39 48 48 48 37 33 33 33 33 23 18 11 11 16 22 20 41 41 41 39 43 40 40 40 40 44 43 57 48 48 46 46 43 43 39 43 42 57 57 48 48 43 43 37 43 42 42 35 35 39 39 43 43 43 43 43 39 39 32 32 31 20 20 32 32 48 43 43 36 34 34 28 28 11 15 6 6 8 8 17 25 39 39 47 43 59 43 43 43 43 43 37 37 37 43 39 40 29 22 22 21 24 24 28 37 42 43 43 43 43 39 37 37 37 28 28 32 33 34 28 30 17 17 17 22 22 21 15 15 15 16 17 16 12 11 11 12 27 28 39 39 22 22 3 0 3 25 23 37 36 39 39 33 33 33 36 31 32 23 23 23 34 34 46 46 46 41 25 25 18 14 8 8 8 8 8 10 18 11 11 6 6 6 13 9 12 12 10 9 11 9 13 11 15 21 19 10 10 8 8 8 8 10 11 9 10 16 15 15 8 8 8 8 8 10 18 23 15 11 11 8 8 8 11 14 17 16 21 19 23 20 28 24 20 12 15 12 11 10 9 9 9 9 9 11 10 8 8 8 10 13 19 25 12 12 11 16 11 12 10 8 6 6 6 6 6 6 10 15 17 17 23 15 26 12 13 10 12 10 10 12 13 14 17 25 19 22 32 19 19 10 10 10 16 16 22 37 33 28 30 18 15 15 15 13 10 10 12 10 8 8 8 8 10 15 21 15 10 10 10 10 10 10 12 8 8 8 7 7 8 8 9 11 11 13 10 9 9 9 10 9 12 12 12 15 15 15 12 13 13 17 12 6 6 8 8 9 10 8 8 8 8 8 8 12 14 11 10 10 11 19 22 24 19 12 11 10 8 8 12 10 10 8 11 11 22 22 21 13 8 8 8 10 8 8 8 8 8 8 8 8 8 12 8 10 18 11 11 11 18 12 15 9 9 8 10 9 9 9 12 11 15 10 10 10 10 9 9 10 10 10 9 15 15 14 10 13 8 8 8 8 8 8 10 12 10 12 15 13 11 9 9 9 8 8 8 8 8 8 8 15 12 24 25 29 27 17 8 8 8 8 6 7 8 8 8 8 8 8 10 10 10 8 8 8 8 10 10 10 12 15 15 17 15 10 7 7 7 7 8 8 12 15 12 10 8 8 8 8 6 6 6 7 8 9 9 9 15 19 19 10 8 8 8 8 11 11 12 12 16 10 10 8 8 8 8 8 8 8 8 8 8 10 6 7 6 8 8 8 8 10 8 8 8 8 8 8 8 8 8 8 8 10 10 10 14 15 13 14 12 11 11 12 10 10 10 10 9 9 9 9 8 6 6 6 8 8 11 11 10 8 8 8 3 0

Alignment Information

BAC End 1

BAC End 2

Query= MSMg01no299_e02.b1 MSMg01no299_e02.b1 CHROMAT_FILE:
MSMg01no299_e02.b1 PHD_FILE: MSMg01no299_e02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:36:08 2005
         (127 letters)



>mm_chr7_120888386_120888912
          Length = 527

 Score =  201 bits (104), Expect = 1e-56
 Identities = 121/127 (95%)
 Strand = Plus / Plus

                                                                       
Query: 1   ataatagctggnccagagcaagcattactgtgtgtggtaggcaagttcaagctcagcccc 60
           ||||||||||| ||||||||||||||||||| |||||||||||||||||||  |||||||
Sbjct: 201 ataatagctggcccagagcaagcattactgtatgtggtaggcaagttcaagggcagcccc 260

                                                                       
Query: 61  ccaagattcctgttccccatcaggaaggtcccttgtaatctctacactggcctccaactg 120
           ||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||
Sbjct: 261 ccaagattcctgttccccatcaggaaggtcccttgtaatctttacactagcctccaactg 320

                  
Query: 121 tgggtag 127
           |||||||
Sbjct: 321 tgggtag 327


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 2
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 127
Length of database: 527
Length adjustment: 8
Effective length of query: 119
Effective length of database: 519
Effective search space:    61761
Effective search space used:    61761
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no299_e02.g1 MSMg01no299_e02.g1 CHROMAT_FILE:
MSMg01no299_e02.g1 PHD_FILE: MSMg01no299_e02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:36:08 2005
         (244 letters)



>mm_chr7_121050410_121051053
          Length = 644

 Score =  441 bits (228), Expect = e-128
 Identities = 240/244 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   agaggagtgaggattcagtgtgacaccagagttcccaggcttcatctattgctggctatt 60
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 444 agaggagtgaggattcagtgtgacaccagagttcccaggcttcaactattgctggctatt 385

                                                                       
Query: 61  acctccttgttagatcaggaacaggaagatcagggacaagactaggttgctaatctcttg 120
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 acctccttgttagatcagggacaggaagatcagggacaagactaggttgctaatctcttg 325

                                                                       
Query: 121 taaaaaattttccaggtattgcaatttgctgcttctagaactcagggttggactgagttg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 taaaaaattttccaggtattgcaatttgctgcttctagaactcagggttggactgagttg 265

                                                                       
Query: 181 acaaaagttttcattaccaactaattaaataaacaaacaaacattcccccactaagactt 240
           ||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 acaaaagttttcattaaaaactaattaaataaacaaacaaacattcccccactaagactt 205

               
Query: 241 agtc 244
           ||||
Sbjct: 204 agtc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space:   149225
Effective search space used:   149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

BAC Information

Search Parameter

Search Result

BAC

BAC End Information

Alignment Information