Query= MSMg01no299_j18.b1 MSMg01no299_j18.b1 CHROMAT_FILE:
MSMg01no299_j18.b1 PHD_FILE: MSMg01no299_j18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:36:35 2005
(711 letters)
>mm_chr7_142048386_142049496
Length = 1111
Score = 1313 bits (679), Expect = 0.0
Identities = 700/707 (99%)
Strand = Plus / Plus
Query: 5 gaattcttctcacgtgcccggtagaggaagtagggtcatacgtacaaggtcattctttgc 64
|||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcttctcacgtggcaggtagaggaagtagggtcatacgtacaaggtcattctttgc 264
Query: 65 tacatagtgaattttagtccatggtaagctatgtgagagattttgaaaactaacaaccac 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tacatagtgaattttagtccatggtaagctatgtgagagattttgaaaactaacaaccac 324
Query: 125 aaaattatataaagttgacaaaatcaacaagcagaagaatataaaaagaaccatattgaa 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aaaattatataaagttgacaaaatcaacaagcagaagaatataaaaagaaccatattgaa 384
Query: 185 aagtggaagaagaaagagagacacacatttaaatgcctttgtatattaactctaatatta 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aagtggaagaagaaagagagacacacatttaaatgcctttgtatattaactctaatatta 444
Query: 245 caatctaagaataatattcttaggggtactcacaggaatttagatatgcagaagaaaaaa 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 caatctaagaataatattcttaggggtactcacaggaatttagatatgcagaagaaaaaa 504
Query: 305 aactgttatactacttagacaactgatgcaggaggattgttgtatactatagaccagctt 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 aactgttatactacttagacaactgatgcaggaggattgttgtatactatagaccagctt 564
Query: 365 gggctatgcacacataacatgtctccagaaagtactaaaatttttagaacccaaagggat 424
|||||||||| | |||||||||||||| |||||||||| |||||||||||||||||||||
Sbjct: 565 gggctatgcagagataacatgtctccaaaaagtactaagatttttagaacccaaagggat 624
Query: 425 ttcgccataaaaagcctctaaggcattaccctgagctgaattggattaaaaagttaagga 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ttcgccataaaaagcctctaaggcattaccctgagctgaattggattaaaaagttaagga 684
Query: 485 gaaatcctaacagaccacagtacagaggccatgatgacccattccaaaccatccccagaa 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 gaaatcctaacagaccacagtacagaggccatgatgacccattccaaaccatccccagaa 744
Query: 545 attctggggtcactatagtgggtttcaattaaattctgttccaaagctgttacctggact 604
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 gttctggggtcactatagtgggtttcaattaaattctgttccaaagctgttacctggact 804
Query: 605 ataggcaagtgtgaattaccttgttgtaaacttgcttatggatgtatatttgcaacagcc 664
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 ataggcaagtgtgaattaccttgttgtaaacttgcttatggatgtatatttgcaacagcc 864
Query: 665 tctgtcagagtcttgtgatagttaccataagactatcacgtatttgt 711
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 865 tctgtcagagtcttgtgatagttaccataagactatcacgtatttgt 911
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 711
Length of database: 1111
Length adjustment: 10
Effective length of query: 701
Effective length of database: 1101
Effective search space: 771801
Effective search space used: 771801
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no299_j18.g1 MSMg01no299_j18.g1 CHROMAT_FILE:
MSMg01no299_j18.g1 PHD_FILE: MSMg01no299_j18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:36:35 2005
(663 letters)
>mm_chr7_142220340_142221403
Length = 1064
Score = 1222 bits (632), Expect = 0.0
Identities = 656/664 (98%), Gaps = 1/664 (0%)
Strand = Plus / Minus
Query: 1 ttgagccattggatgtctaaggtgccttgagcaacagcactgccagccacatagccagcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 864 ttgagccattggatgtctaaggtgccttgagcaacagcactgccagccacatagccagcc 805
Query: 61 agaccactctcaatgcccctacaccaggcttcttaaatgttccatgatgcctcaagaaaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 agaccactctcaatgcccctacaccaggcttcttaaatgttccatgatgcctcaagaaaa 745
Query: 121 cgatgcaaaagactgcagccgtctgccttggctcctgcacgaggagccggagccaggact 180
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 744 tgatgcaaaagactgcagccgtctgccttggctcctgcacgaggagctggagccaggact 685
Query: 181 gtttgaacagtttgtaccaggctttgtgtaatcaatcacagcccggatggatcatttcca 240
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 684 gtttgaacagtttgtaccaggctttgtgcaatcaatcacagcccggatggatcatttcca 625
Query: 241 ctttggtcagagtggaagtacatctcctggtggaaagatagtaattcttgtggcaaggct 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 ctttggtcagagtggaagtacatctcctggtggaaagatagtaattcttgtggcaaggct 565
Query: 301 gtgactggtctacaacacaaaccttaataactgtgattggtccaaaacaagtagctgtga 360
||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct: 564 gtgactggtctacaacacaaaccttaataactgtgattggtccaaaataaatagctgtga 505
Query: 361 ttggtccaatagggactggtccaaatactctagtttggtctatataagcagaccctcagc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 ttggtccaatagggactggtccaaatactctagtttggtctatataagcagaccctcagc 445
Query: 421 tcactcagagttgactgagggacactttcctctactgcccactctgatactgcaatatca 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tcactcagagttgactgagggacactttcctctactgcccactctgatactgcaatatca 385
Query: 481 ggctcagtgaagagttctcttgaattac-gttctttgtctccttccaggagtcctcacta 539
|||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 384 ggctcagtgacgagttctcttgaattaccgttctttgtctccttccaggagtcctcactg 325
Query: 540 agctgaaaacaggatgaagatagtggcacaagcaccttcagccacattggcaatggaatt 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 agctgaaaacaggatgaagatagtggcacaagcaccttcagccacattggcaatggaatt 265
Query: 600 agctggcagatgtcctgggcaagcactgtcctgggcaagggcaactgtacctggctgcag 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 agctggcagatgtcctgggcaagcactgtcctgggcaagggcaactgtacctggctgcag 205
Query: 660 cctc 663
||||
Sbjct: 204 cctc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 663
Length of database: 1064
Length adjustment: 10
Effective length of query: 653
Effective length of database: 1054
Effective search space: 688262
Effective search space used: 688262
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
