Query= MSMg01no299_l23.b1 MSMg01no299_l23.b1 CHROMAT_FILE:
MSMg01no299_l23.b1 PHD_FILE: MSMg01no299_l23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:36:45 2005
(335 letters)
>mm_chr7_19873570_19874304
Length = 735
Score = 557 bits (288), Expect = e-163
Identities = 309/316 (97%)
Strand = Plus / Plus
Query: 3 ggaattctctctgtagtccaggctggctttgaactcagagcttcacctgcctcagcctat 62
|||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 203 ggaattctctctgtagaccaggctggctttgaactcagagcttcacctgcctctgcctat 262
Query: 63 ggagtgctgggactaaaggcgtgagcaggtatcaataccaccgggcttgaacccaggtct 122
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 263 ggagtgctgggactaaaggcatgagcaggtatcaataccaccgggcttgaacccaggtct 322
Query: 123 gcaagagcactgagccatacctctagcctctcaaaggacttttgagagtccatcctcacc 182
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 gcaagagcactgagccatatctctagcctctcaaaggacttttgagagtccatcctcacc 382
Query: 183 ttgtaaaggtagagtctctcttttgcaagggttggggtggggtgtgttgttacagggtct 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 ttgtaaaggtagagtctctcttttgcaagggttggggtggggtgtgttgttacagggtct 442
Query: 243 cactatgttgctctggttgtcctggaactcactctgtttatcaggctagtcccaaacttc 302
||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct: 443 cactatgttgctctggttgtcctggaactcactctgtagaccaggctagtcccaaacttc 502
Query: 303 acagagacccacagga 318
||||||||||||||||
Sbjct: 503 acagagacccacagga 518
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 335
Length of database: 735
Length adjustment: 9
Effective length of query: 326
Effective length of database: 726
Effective search space: 236676
Effective search space used: 236676
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no299_l23.g1 MSMg01no299_l23.g1 CHROMAT_FILE:
MSMg01no299_l23.g1 PHD_FILE: MSMg01no299_l23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:36:45 2005
(290 letters)
>mm_chr7_20049528_20050217
Length = 690
Score = 480 bits (248), Expect = e-140
Identities = 278/288 (96%), Gaps = 3/288 (1%)
Strand = Plus / Minus
Query: 1 ctgacacccccaagcccccagcatggagccgggtgtggtggcgcagcctcctgtaatccc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 ctgacacccccaagcccccagcatggagccgggtgtggtggcgcagcctcctgtaatccc 564
Query: 61 agtccccgggaggctggggccggaggaccacatgcttttgagattttttgaggctcaggt 120
||||||| ||||||||||||||||||||||||||||||||||| |||||||||| |||||
Sbjct: 563 agtcccc-ggaggctggggccggaggaccacatgcttttgaga-tttttgaggcccaggt 506
Query: 121 ttcatagtgagaccccgtatacagacaatccctaaatgcgaagattatgcctttaatcct 180
|||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 505 ttca-agtgagaccccgtatacagacaatctctaaatgcgaagattatgcctttaatcct 447
Query: 181 ggcaactccggaggtcaacctgagtcacgtgagatcaaaacatcaaaagccaaggcaggg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 ggcaactccggaggtcaacctgagtcacgtgagatcaaaacatcaaaagccaaggcaggg 387
Query: 241 gacgtggctcatttgttaaagttcttgtctggcttgcaagaaaccctg 288
|||| |||||| ||| || ||| |||||||||||||||||||||||||
Sbjct: 386 gacgaggctcagttggtagagtacttgtctggcttgcaagaaaccctg 339
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 690
Length adjustment: 9
Effective length of query: 281
Effective length of database: 681
Effective search space: 191361
Effective search space used: 191361
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
