BAC Information

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BAC

Clone NameMSMg01-300H23
Chromosome7 (Build37)
Map Location 31,302,707 - 31,302,881
singlet/doubletsinglet
Overlap geneGm1082
Upstream geneLOC100043791, 4932431P20Rik, 4930432E11Rik, 1700067C01Rik, Zfp84, LOC100043794, Zfp30, EG625349, 6330581L23Rik, BC027344, Zfp420, Zfp27, Zfp74, LOC625437, LOC100043796, Zfp568, Zfp14, LOC100043798, Zfp82, Zfp566, Zfp260, Zfp382, Zfp146, EG330503, Cox7a1, Capns1, Tbcb, Polr2i, Ovol3, Wdr62, EG668354, 1700020L13Rik, Clip3, Alkbh6, AI428936, 0610010E21Rik, Lrfn3, Tyrobp, Hcst, AY078069, Aplp1, Kirrel2, Nphs1, LOC100034728, Prodh2
Downstream geneSnx26, BC053749, Hspb6, 1810054G18Rik, Psenen, U2af1l4, Tmem149, Wbp7, Zbtb32, Upk1a, Cox6b1, Etv2, 3100004P22Rik, 2310022K01Rik, 4930479M11Rik, 2200002J24Rik, EG233075, Atp4a, Tmem147, Gapdhs, Sbsn, Dmkn, Krtdap, Ffar2, Ffar3, Ffar1, Cd22, Mag, Hamp2, Usf2-ps1, Hamp1, Usf2, LOC100043823, Lsr, Tmem162, Fxyd5, Fxyd7, Fxyd1, Lgi4, Fxyd3, Hpn, Scn1b, Gramd1a, LOC672598, LOC100043323, LOC100043827, Apbh, Abpe, LOC100043326, EG384585, LOC100043328, LOC100043331, LOC626181, LOC100043334
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-300H23.T7 (MSMg01no300_h23.b1)MSMg01-300H23.TJ (MSMg01no300_h23.g1)
ACCAG426970AG426971
length751759
length of high quality
(start - end)		175 (77 - 251)167 (72 - 238)
definitionCHROMAT_FILE: MSMg01no300_h23.b1 PHD_FILE: MSMg01no300_h23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:37:39 2005CHROMAT_FILE: MSMg01no300_h23.g1 PHD_FILE: MSMg01no300_h23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:37:40 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCGNGACTGGGCNGGA
TTCACGTACAGTTTTCCTATATGGGTCTGGAAACTCATCCACGCTGGCCT
CGTAAAACAAGCCTCACCTTGTTCCCGTATTTTCATTTTGGAACAACTTG
TTTGGGATGATGGAGTTTTGGCAATGGTTTGTGTTTTAGGAAGATCCCTT
TGGGGCACAGGTTGAGAGTGGAAAGCCAGTTGTCACTGCAGAAGATGGCA
GAGTTCTATAAGTAAATAAGAGGCTGCGGATGTGCTGCTCAGAGATTCCA
GCAGGGCCACCTCTGGTCTGGTTTGGTAATTTGCACCCCACCTTGTTCTA
GCTCTGTGGAGCTTCTATTGCACTGCGTTGAGGCGCTATTTCCTGAACCT
AAAATCAAGGCATAGGTGTGCTACGTTTGAGGTCGCGGCTAGTACAGAAC
CTGAGGCGATGGTGGTATGGATGAATAAAGGGTCTGCCATGAACACTGAC
CTTTTACGCTGGATTTGACCAGAGTGTTTGCCTAAGGCCTGGGGGTGTAA
TAGAGTGTGCGTTCTCCATGCTCATTGCCCGTGTCTGTTGTCTTACTACT
CGCACGTCAATCCCAGCTCCCCGATATGACACCAGCATTAGCCCACGCCC
ATCTTTGGCTGCACATTGATTTCTTTGACACCTCTGACTGACTCGACATG
TGTGTATTCTGCCGTTTGTTCCCCATTCTGTCACTCTTTTTCGCGCGTCC
C

TGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTGTCCTGGATCACTGACAAGACAAGAAAG
TAAAAGTTTTCCCTGTGTGGTGCCTTGAGTGAGAATGGCCCCCACAGCTC
CTCTGTTTGAATCTTTCCCCTGTTAGTGGATCTGTTTGGGATGGATTAGG
AAGTGTGGCCTTACTAAAGGAGAAGAGTCACTGGGGAAGGGCTTAGAGGT
TTCAAAAGCCCATGCCAAACCCAGTCTTGCTGCCCCTCTGTCTCTCTCTC
TCCTCTCTCCCTCCCTCCCTCCCCCCTTCCCTGAGAAGTTTGCTTCAGAT
ATGAGCTCTCATCTTTTTTTTCTCCCCCCTCCCTGCCTGATGTCATGTGT
CCTGACATGTTGCTAACCCGCCATCCTTCTGAAAATGATATCACATTCCC
AGTTAAATGCTTCTATAAGTTATCTTGTTCATGGTGTTTTCTCACAGTAA
TATAACTGTCTCTAACAAGTCTTGCTACACTCCGACCTTTTTCTGTCTTC
AAAATGATCCCTCATCTCCTGTCTGCTGCCGGTACGTACCATTGAATACC
TACGTAGCAAAGCTCTTTGCTATAGACACACTTTTACTCTCTTATTTTCG
CATGCTAGACTCACCATGATACCGATCGTACACGTATCATCCCGATCGCA
CTTGCTCACATTTTACCTGGCTCCCTTGTCCCCTGCTTTTATTTGCCTCC
CGACTTTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no300_h23.b1 MSMg01no300_h23.b1 CHROMAT_FILE:
MSMg01no300_h23.b1 PHD_FILE: MSMg01no300_h23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:37:39 2005
         (175 letters)



>mm_chr7_31302507_31303081
          Length = 575

 Score =  308 bits (159), Expect = 2e-88
 Identities = 171/175 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctggaaactcatccacgctggcctcgtaaaacaagcctcaccttgttcccgtattttcat 60
           |||||||||||||||||||||||||||||||||||||||||| ||||   ||||||||||
Sbjct: 201 ctggaaactcatccacgctggcctcgtaaaacaagcctcaccctgttggtgtattttcat 260

                                                                       
Query: 61  tttggaacaacttgtttgggatgatggagttttggcaatggtttgtgttttaggaagatc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tttggaacaacttgtttgggatgatggagttttggcaatggtttgtgttttaggaagatc 320

                                                                  
Query: 121 cctttggggcacaggttgagagtggaaagccagttgtcactgcagaagatggcag 175
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cctttggggcacaggttgagagtggaaagccagttgtcactgcagaagatggcag 375


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 175
Length of database: 575
Length adjustment: 8
Effective length of query: 167
Effective length of database: 567
Effective search space:    94689
Effective search space used:    94689
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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