Query= MSMg01no300_j04.b1 MSMg01no300_j04.b1 CHROMAT_FILE:
MSMg01no300_j04.b1 PHD_FILE: MSMg01no300_j04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:37:45 2005
(669 letters)
>mm_chr7_78954386_78955455
Length = 1070
Score = 1203 bits (622), Expect = 0.0
Identities = 658/670 (98%), Gaps = 1/670 (0%)
Strand = Plus / Minus
Query: 1 tggtagacatcatgatcttggatttccaagtatcttgaggtgtaaaaatattaatccctg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 870 tggtagacatcatgatcttggatttccaagtatcttgaggtgtaaaaatattaatatctg 811
Query: 61 ctctttacttctcctatgcaattatggtttttttaatggcaactttagctcaaaagtatg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 810 ctctttacttctcctatgcaattatggtttttttaatggcaactttagctcaaaagtatg 751
Query: 121 taaggctaggtagataaagttagggccaagacatctccgaaatatttatgtttacacaat 180
||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 750 taaggctaggtagataaggttagggccgagacatctccgaaatatttatgtttacacaat 691
Query: 181 ttaaagagttaagctaagaatccacatgattcctggatcttataattacaaggcctgtga 240
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 690 ttaaagagttaagctaagaatacacatgattcctggatcttataattacaaggcctgtga 631
Query: 241 acttttggctagtcacagctttaatcatagtctccatttcctcaccctagcagtgatatc 300
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 630 acttttggctagtcacagctttaatcacagtctccatttcctcaccctagcagtgatatc 571
Query: 301 caggtttcctggcattgcaggtaagaaatgaaggaaaatcgacctagtgagtctttagta 360
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 570 caggtttcccggcattgcaggtaagaaatgaaggaaaatcgacctagtgagtctttagta 511
Query: 361 atatcttagtagctttggtacttagcagcaaatttgcaatccctgttatctaaacattat 420
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 510 atatcttagtagctttggtacttaggagcaaatttgcaatccctgttatctaaacattat 451
Query: 421 aatacctgagtttcttggagtcactaaccactttctgattaatttgactaagcatggcct 480
|||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct: 450 aatacctgagtttcttggagtcactaaccactttctgattaatttggcttagcatggcct 391
Query: 481 agaagtagtaatgcctgagtaatcggcttcttattttttacctttgcaccaactccatat 540
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 390 agaagtagtaatgcctgagtaatcagcttcttattttttacctttgcaccaactccatat 331
Query: 541 ttaaagtttaagaactagatccctcttttaaatttgagct-aaaaaaaaaaccttcaaaa 599
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 330 ttaaagtttaagaactagatccctcttttaaatttgagctaaaaaaaaaaaccttcaaaa 271
Query: 600 acataacaacaaacaatagattgaaaaattatttttaaaatcaaatcatatctgctttta 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 acataacaacaaacaatagattgaaaaattatttttaaaatcaaatcatatctgctttta 211
Query: 660 atttctgtct 669
||||||||||
Sbjct: 210 atttctgtct 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 669
Length of database: 1070
Length adjustment: 10
Effective length of query: 659
Effective length of database: 1060
Effective search space: 698540
Effective search space used: 698540
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no300_j04.g1 MSMg01no300_j04.g1 CHROMAT_FILE:
MSMg01no300_j04.g1 PHD_FILE: MSMg01no300_j04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:37:45 2005
(297 letters)
>mm_chr7_78802608_78803305
Length = 698
Score = 545 bits (282), Expect = e-160
Identities = 294/298 (98%), Gaps = 1/298 (0%)
Strand = Plus / Plus
Query: 1 catcaaaatctacttttcaaaatggaaatgtgaaggttcaaagatcttatttaaatagag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 catcaaaatctacttttcaaaatggaaatgtgaaggttcaaagatcttatttaaatagag 260
Query: 61 aaattctgaaattctctatttaaaaaaaaataaaacctacatggtttggaagtgtggctc 120
||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct: 261 aaattctgaaattctctattttaaaaaaaataaaacctacatggtttggaattgtggctc 320
Query: 121 agtagtaaaacacttactgcgtgttcctgatcacctctccagtaccacagaagggtaggt 180
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 321 agtagtaaaacacttactgcgtgttcctgatcacctctccaggaccacagaagggtaggt 380
Query: 181 ggagcttaggggacttctttttaattgacattgatatgggacaaaaa-tgcacaaggcat 239
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 381 ggagcttaggggacttctttttaattgacattgatatgggacaaaaaatgcacaaggcat 440
Query: 240 atattaacaagcatttcatactaaagtaataacacaatatgcttctcatttgtttatt 297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atattaacaagcatttcatactaaagtaataacacaatatgcttctcatttgtttatt 498
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 297
Length of database: 698
Length adjustment: 9
Effective length of query: 288
Effective length of database: 689
Effective search space: 198432
Effective search space used: 198432
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
