BAC Information

Click to search

BAC

Clone NameMSMg01-301P12
Chromosome7 (Build37)
Map Location 10,898,795 - 11,086,937
singlet/doubletdoublet
Overlap geneLOC100042206, Nlrp4d, LOC100042214, V1re10, Zik1
Upstream geneV2r4, LOC100042848, LOC100042096, LOC100042870, LOC100042105, LOC100042859, LOC100042113, LOC100042120, LOC100042126, LOC100042139, LOC100042894, Vmn2r47, 2810047C21Rik, LOC665625, LOC545911, EG625580, LOC100042163, LOC625605, EG434117, EG628152, LOC100042921, Vmn2r52, LOC665663, V1re11, LOC628521, LOC628525
Downstream geneEG628580, V1re9, V1rl1, EG628596, Nlrp4b, LOC333184, V1re13, BQ559217, LOC637237, LOC236479, EG665879, Zscan4b, LOC665793, EG665798, Gm397, Zscan4-ps1, LOC635187, LOC100042997, LOC100042293, Zscan4d, LOC628737, LOC676750, LOC672893, LOC546931, LOC675762, Zscan4e, LOC665857, LOC665861, Zscan4f, LOC673742, LOC665887, LOC637541, LOC100042361, Zscan4-ps2, LOC675782
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-301P12.T7 (MSMg01no301_p12.b1)MSMg01-301P12.TJ (MSMg01no301_p12.g1)
ACCAG428002AG428003
length741732
length of high quality
(start - end)		680 (55 - 734)626 (72 - 697)
definitionCHROMAT_FILE: MSMg01no301_p12.b1 PHD_FILE: MSMg01no301_p12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:39:29 2005CHROMAT_FILE: MSMg01no301_p12.g1 PHD_FILE: MSMg01no301_p12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:39:29 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(10,898,795 - 10,899,474)(11,086,312 - 11,086,937)
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXTAAAGTGACCCAAGACATAAAAATGGAAGTAGAAACAATAAATAAA
ATGAAAATGGAGGCAAATCTGGAAATGGAAAAACTAGGAAAGAGGTCGGC
AATTATAGATGTAAGGATTACCAACAGAATACAAGAGAAGGAAGAGAGTG
CATGAACAGGGAACAAAAGGCCCAAAGTCTGTTAGAAATAAAAGCTAGCC
TAAATCACAGAGAAAAGATCAAAAGAAGTATACATGTTATATATAAGCGA
TTGAATGAAGAGCTAATATGTGGGGCTCCAGACATGGGACAATAGTTAAA
ACACCCAGAAGACCTAGGATCAATTACAAGTATCCACATGACAGCTTCAA
TGTACTCTTCTGGCTTCCAAGCATACTGTCCATAAATAGTGTACACATAT
ATAAGCAGGCACACTCACATACACATAATATAGTTTTTAACTCTTCACAT
GTATTTTAATCATAAATTAAAGATTTTTGTGTGCATCTAGTTTTCAAGAA
GAAGGTGGGAAAGAACAGCACAGAGACAATTTTTAAACAAATTAAAAAAA
TAAAATAAAAAGATGTGCACAAGAGGTACTCAGTTATTTGTCATAAAGTA
NAGGATAACCAGAGTACAATCCATGAACCTAAAGAAGCCAAATAACAAGG
AGGGCCCAAGGAAGTATGGTTGAGTATTTCTTAGAAAAAGA

ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXAGTTACACCATACACTTAAGGGCATAGCA
TCTTAATCTAGTAGAGTCAGTGGACCTGATGTAGAAGGACTCTCTGGGGG
GCCATTGAATGTAGTCAGGAGAAGAGGAAGGCAATGACTGAAGAAGGTAG
GTCAGGTTCATGAAAGCTGAAGAAAGTGATGATATTTGAAATCTGCAGGT
TTCCCTGAGTGACTGAAGTTGAAATGTGGGACAGTCAGGCAGTGTACAGT
GGTTTCTGTATGGTTTGTGTGCCCAGCCCCAACCCCATAGCTTCATGTAT
GGGAATATATTACTCACTGTCAGTTATTAATAGATAGAAATCTTTCTGGC
TGTGGTGTTTAGAGAATCTTGGGGGGTGATTAGGATAAAATCAACTCATT
ATTGTTAACCTCCTCCCCCATGGCTGAATCACAGTGATGGTACACATATG
TTCTGCTTTCTTCCTGTCTCCTGTATGCTGCTTTCCTGGCTGAGAACCCT
GTAGTAAGGGTCCTCACCAAAGAGACCTTGAGCCTTCTGAATGTACTGAA
TACTGTTGACTGAGGCATAAGTTGCATCTCCACACTTTATGATACTGACC
TAACATTCCCTGGCAGCCCCTTCCCACGCATCTGTTCCCTCTGCCTTACA
TCAGCACACCATGCCCTCATGTTCAGAGATGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no301_p12.b1 MSMg01no301_p12.b1 CHROMAT_FILE:
MSMg01no301_p12.b1 PHD_FILE: MSMg01no301_p12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:39:29 2005
         (680 letters)



>mm_chr7_10898595_10899674
          Length = 1080

 Score = 1301 bits (673), Expect = 0.0
 Identities = 678/680 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   taaagtgacccaagacataaaaatggaagtagaaacaataaataaaatgaaaatggaggc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 taaagtgacccaagacataaaaatggaagtagaaacaataaataaaatgaaaatggaggc 260

                                                                       
Query: 61  aaatctggaaatggaaaaactaggaaagaggtcggcaattatagatgtaaggattaccaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaatctggaaatggaaaaactaggaaagaggtcggcaattatagatgtaaggattaccaa 320

                                                                       
Query: 121 cagaatacaagagaaggaagagagtgcatgaacagggaacaaaaggcccaaagtctgtta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cagaatacaagagaaggaagagagtgcatgaacagggaacaaaaggcccaaagtctgtta 380

                                                                       
Query: 181 gaaataaaagctagcctaaatcacagagaaaagatcaaaagaagtatacatgttatatat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gaaataaaagctagcctaaatcacagagaaaagatcaaaagaagtatacatgttatatat 440

                                                                       
Query: 241 aagcgattgaatgaagagctaatatgtggggctccagacatgggacaatagttaaaacac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aagcgattgaatgaagagctaatatgtggggctccagacatgggacaatagttaaaacac 500

                                                                       
Query: 301 ccagaagacctaggatcaattacaagtatccacatgacagcttcaatgtactcttctggc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ccagaagacctaggatcaattacaagtatccacatgacagcttcaatgtactcttctggc 560

                                                                       
Query: 361 ttccaagcatactgtccataaatagtgtacacatatataagcaggcacactcacatacac 420
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 561 ttccaagcatactgtccataaatagtgtacacatatataagcaggcacgctcacatacac 620

                                                                       
Query: 421 ataatatagtttttaactcttcacatgtattttaatcataaattaaagatttttgtgtgc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ataatatagtttttaactcttcacatgtattttaatcataaattaaagatttttgtgtgc 680

                                                                       
Query: 481 atctagttttcaagaagaaggtgggaaagaacagcacagagacaatttttaaacaaatta 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 atctagttttcaagaagaaggtgggaaagaacagcacagagacaatttttaaacaaatta 740

                                                                       
Query: 541 aaaaaataaaataaaaagatgtgcacaagaggtactcagttatttgtcataaagtanagg 600
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 741 aaaaaataaaataaaaagatgtgcacaagaggtactcagttatttgtcataaagtaaagg 800

                                                                       
Query: 601 ataaccagagtacaatccatgaacctaaagaagccaaataacaaggagggcccaaggaag 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 ataaccagagtacaatccatgaacctaaagaagccaaataacaaggagggcccaaggaag 860

                               
Query: 661 tatggttgagtatttcttag 680
           ||||||||||||||||||||
Sbjct: 861 tatggttgagtatttcttag 880


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 680
Length of database: 1080
Length adjustment: 10
Effective length of query: 670
Effective length of database: 1070
Effective search space:   716900
Effective search space used:   716900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no301_p12.g1 MSMg01no301_p12.g1 CHROMAT_FILE:
MSMg01no301_p12.g1 PHD_FILE: MSMg01no301_p12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:39:29 2005
         (626 letters)



>mm_chr7_11086112_11087137
          Length = 1026

 Score = 1187 bits (614), Expect = 0.0
 Identities = 623/626 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   agttacaccatacacttaagggcatagcatcttaatctagtagagtcagtggacctgatg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 826 agttacaccatacacttaagggcatagcatcttaatctagtagagtcagtggacctgatg 767

                                                                       
Query: 61  tagaaggactctctggggggccattgaatgtagtcaggagaagaggaaggcaatgactga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 766 tagaaggactctctggggggccattgaatgtagtcaggagaagaggaaggcaatgactga 707

                                                                       
Query: 121 agaaggtaggtcaggttcatgaaagctgaagaaagtgatgatatttgaaatctgcaggtt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 706 agaaggtaggtcaggttcatgaaagctgaagaaagtgatgatatttgaaatctgcaggtt 647

                                                                       
Query: 181 tccctgagtgactgaagttgaaatgtgggacagtcaggcagtgtacagtggtttctgtat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 646 tccctgagtgactgaagttgaaatgtgggacagtcaggcagtgtacagtggtttctgtat 587

                                                                       
Query: 241 ggtttgtgtgcccagccccaaccccatagcttcatgtatgggaatatattactcactgtc 300
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 586 ggtttgtgtgcccagccccaaccccatagcttcatgtatgggaatataatactcactgtc 527

                                                                       
Query: 301 agttattaatagatagaaatctttctggctgtggtgtttagagaatcttggggggtgatt 360
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 526 agttattaataggtagaaatctttctggctgtggtgtttagagaatcttggggggtgatt 467

                                                                       
Query: 361 aggataaaatcaactcattattgttaacctcctcccccatggctgaatcacagtgatggt 420
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 466 aggataaaatcaactcattattgttgacctcctcccccatggctgaatcacagtgatggt 407

                                                                       
Query: 421 acacatatgttctgctttcttcctgtctcctgtatgctgctttcctggctgagaaccctg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 406 acacatatgttctgctttcttcctgtctcctgtatgctgctttcctggctgagaaccctg 347

                                                                       
Query: 481 tagtaagggtcctcaccaaagagaccttgagccttctgaatgtactgaatactgttgact 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 346 tagtaagggtcctcaccaaagagaccttgagccttctgaatgtactgaatactgttgact 287

                                                                       
Query: 541 gaggcataagttgcatctccacactttatgatactgacctaacattccctggcagcccct 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 286 gaggcataagttgcatctccacactttatgatactgacctaacattccctggcagcccct 227

                                     
Query: 601 tcccacgcatctgttccctctgcctt 626
           ||||||||||||||||||||||||||
Sbjct: 226 tcccacgcatctgttccctctgcctt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 626
Length of database: 1026
Length adjustment: 10
Effective length of query: 616
Effective length of database: 1016
Effective search space:   625856
Effective search space used:   625856
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |