BAC Information

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BAC

Clone NameMSMg01-302E05
Chromosome7 (Build37)
Map Location 117,388,599 - 117,564,467
singlet/doubletdoublet
Overlap geneSwap70, EG668368, Sbf2
Upstream geneStk33, EG668320, 1700095J03Rik, Trim66, Rpl27a, St5, LOC100042582, D930014E17Rik, BC051019, Ascl3, Tmem9b, 4930431P19Rik, Nrip3, Scube2, Phxr5, Rab6ip1, Tmem41b, Ipo7, AA474408, Zfp143, Wee1
Downstream geneLOC668246, Adm, B430319F04Rik, Ampd3, Rnf141, Xlkd1, Mrvi1, Ctr9, Eif4g2, LOC100043221, LOC100042658, LOC384658
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-302E05.T7 (MSMg01no302_e05.b1)MSMg01-302E05.TJ (MSMg01no302_e05.g1)
ACCAG428215AG428216
length730729
length of high quality
(start - end)
313 (41 - 353)286 (71 - 356)
definitionCHROMAT_FILE: MSMg01no302_e05.b1 PHD_FILE: MSMg01no302_e05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:39:51 2005CHROMAT_FILE: MSMg01no302_e05.g1 PHD_FILE: MSMg01no302_e05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:39:52 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(117,388,599 - 117,388,909)(117,564,183 - 117,564,467)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
TCAAAAGTCTGGAAATTGCTTTGTTTTCCAGCACCAGGATTAGCGTGGGC
TGAGTCAGTGGCCGGGCCATGGTCTGCCGGCCTCATATTCTGGAATTCTG
TGCTCTGATACAGGACTGTGTCCCCTTGCTGGAGTATATTTTTAGATTTG
CGTTTTAAGACACTCTCATAGTCTGATACTTCGAAGTCCTAGAACTGGGG
AGGAAACATTCCCCAGCAGACAACAGAATTGGAGCAGAGCCTTGTCACGC
GGCCAGTGAGGCTGTGATAGGACAGTGTGCCTGGCCACCTGGAGCGGAAG
CTGACTCATCCTATGCCCCCCCCCCCCTTTCCATGTAGTGGGCTCAGATC
AGCAAAGATCAGCATCTTGTCTTGAAATTTGTGTTGGGGAGGAAAAAACC
CAGTAGTGTGAGGAGTGGTAAGAGGAGCAGGATTGCTGTTCCTTATGCAT
GGGAGTAGGAGCTATTCCGGTTCATACAGCTTGGCGGATCCCATGGTGAG
CCTGACTAAGTAGCTTAGTCAATAAAGGGCAAATAGATTAGATCAACTTT
TACAGTTTTATGTGTTTATTGTCTGTATGAAGAGGAAGAGGGTACGTGTG
CTTGTGGAGGTTATAGGTCAACCTGTATACGTGCGCTTCTTCCATTGTGG
GCTCTGGTGATTGAGCTCATTTTTCGTTCT
CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTCTTGTTCTCAGACCCTTCCTGCTGCCTTG
AGGGCCCTTAAAGGAAAAGCAGCAAGACAGTGTCTCACTGATGAACTGGG
CTTGCACGTTCAGCAGAACCGGGCAATACTGGACCATCAACAGTTTGACT
ACATAATAAGGATGATGAACTGTACTCTACAGGTAATCTTGAGTGATTTT
AGATTATTCCCATTTTGCAAATACCTTTTTTCCCCAAAAGATATATTAAT
TACTGAACTATCAATGTCTTGAGGCTCCTATGGCTAAAAAAGAGCTGAAA
TCCATTTAGTTACACGCTNNTTCGNTGACCTAAATCCTCACTTCTTTGTT
CTTTCCTTGTTTTCTAAAGACACGACTAAAGAAAACTTTGCGGAGGGGAT
AATATGAGCAATATATTAAAGGCCCATAGTCGTATATTACCAAATTTTAT
ACTTATGTCTGTTAATGTAGTTTTTGGCTATTTTATTGGGTTTTAATGTT
TTATTACACCCTAATCTAACCTTCAACACTAGGTAGGATAGAAAGAAGGT
TAGAGGGAAAGGGAACATACTTCTCCTTGAATTACTTCCTACTGATTAGG
ATGTTGAGTCCCTTGTGGCAAGCCCCATCTTCATCACTCAAATACCTCAA
TTACTTCTCATAAAACCACCCTATTATGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no302_e05.b1 MSMg01no302_e05.b1 CHROMAT_FILE:
MSMg01no302_e05.b1 PHD_FILE: MSMg01no302_e05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:39:51 2005
         (313 letters)



>mm_chr7_117388397_117389109
          Length = 713

 Score =  586 bits (303), Expect = e-172
 Identities = 309/311 (99%)
 Strand = Plus / Plus

                                                                       
Query: 3   cggaattctcaaaagtctggaaattgctttgttttccagcaccaggattagcgtgggctg 62
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 cggaattctcagaagtctggaaattgctttgttttccagcaccaggattagcgtgggctg 262

                                                                       
Query: 63  agtcagtggccgggccatggtctgccggcctcatattctggaattctgtgctctgataca 122
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 agtcagtggccggggcatggtctgccggcctcatattctggaattctgtgctctgataca 322

                                                                       
Query: 123 ggactgtgtccccttgctggagtatatttttagatttgcgttttaagacactctcatagt 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 ggactgtgtccccttgctggagtatatttttagatttgcgttttaagacactctcatagt 382

                                                                       
Query: 183 ctgatacttcgaagtcctagaactggggaggaaacattccccagcagacaacagaattgg 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 ctgatacttcgaagtcctagaactggggaggaaacattccccagcagacaacagaattgg 442

                                                                       
Query: 243 agcagagccttgtcacgcggccagtgaggctgtgataggacagtgtgcctggccacctgg 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 agcagagccttgtcacgcggccagtgaggctgtgataggacagtgtgcctggccacctgg 502

                      
Query: 303 agcggaagctg 313
           |||||||||||
Sbjct: 503 agcggaagctg 513


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 313
Length of database: 713
Length adjustment: 9
Effective length of query: 304
Effective length of database: 704
Effective search space:   214016
Effective search space used:   214016
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no302_e05.g1 MSMg01no302_e05.g1 CHROMAT_FILE:
MSMg01no302_e05.g1 PHD_FILE: MSMg01no302_e05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:39:52 2005
         (286 letters)



>mm_chr7_117563983_117564668
          Length = 686

 Score =  543 bits (281), Expect = e-159
 Identities = 284/285 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcttgttctcagacccttcctgctgccttgagggcccttaaaggaaaagcagcaagacag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 tcttgttctcagacccttcctgctgccttgagggcccttaaaggaaaagcagcaagacag 426

                                                                       
Query: 61  tgtctcactgatgaactgggcttgcacgttcagcagaaccgggcaatactggaccatcaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 tgtctcactgatgaactgggcttgcacgttcagcagaaccgggcaatactggaccatcaa 366

                                                                       
Query: 121 cagtttgactacataataaggatgatgaactgtactctacaggtaatcttgagtgatttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 cagtttgactacataataaggatgatgaactgtactctacaggtaatcttgagtgatttt 306

                                                                       
Query: 181 agattattcccattttgcaaataccttttttccccaaaagatatattaattactgaacta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 agattattcccattttgcaaataccttttttccccaaaagatatattaattactgaacta 246

                                                        
Query: 241 tcaatgtcttgaggctcctatggctaaaaaagagctgaaatccat 285
           |||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 245 tcaatgtcttgaggctgctatggctaaaaaagagctgaaatccat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 686
Length adjustment: 9
Effective length of query: 277
Effective length of database: 677
Effective search space:   187529
Effective search space used:   187529
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)