BAC Information

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BAC

Clone NameMSMg01-302K17
Chromosome7 (Build37)
Map Location 13,590,826 - 13,591,133
singlet/doubletsinglet
Overlap geneZBTB45
Upstream geneLOC628946, LOC100043075, LOC100042433, V1rg7, LOC100042437, V1rg3, LOC100042446, LOC100043092, V1rg9, V1rg12, V1rg8, V1rg11, Zfp551, EG666065, Zfp606, 2900092C05Rik, EG637908, EG666085, Vmn2r55, LOC629079, LOC629081, EG232875, LOC100043128, LOC100042515, Zfp329, Zfp110, Zfp128, Zscan22, Rps5, 2310014L17Rik, 1810019N24Rik, Zfp324, Zfp446, Slc27a5
Downstream geneLOC100042553, Trim28, Chmp2a, Ube2m, Mzf1, V1rj3, LOC100043156, V1rk1, LOC666177, EG232887, V1rj2, 6330408A02Rik, Lig1, Pla2g4c, LOC666225, Cabp5, LOC666232, Gm767, LOC666243, 9230107M04Rik, EG666256, LOC666267, LOC100042624, LOC100043194, Sult2a1, EG620627, EG434121
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-302K17.T7 (MSMg01no302_k17.b1)MSMg01-302K17.TJ (MSMg01no302_k17.g1)
ACCAG428493AG428494
length754998
length of high quality
(start - end)
304 (47 - 350)---
definitionCHROMAT_FILE: MSMg01no302_k17.b1 PHD_FILE: MSMg01no302_k17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:40:22 2005CHROMAT_FILE: MSMg01no302_k17.g1 PHD_FILE: MSMg01no302_k17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:40:22 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCACCCGCGGAATTCTCTG
ACCTCACCCCCCAAAGTCTGGAGCCACCCTTCCCTCATTGGGCACCTATG
GAGGCCCAGATGGACCTCCCTAGGGATTTTAGGATTCCAATCTAATAAAG
GACATTGGGCCAGTACATGCCTCGTAGGCTTTCTGGGCTGTGGGCTTGGG
GCTTGGTCCCTACGTTCCTGACTTGCACTTTTGCGGTGACCTGAGATTTC
CTGAGTAGGTAGGCACAATTTGCTTTGATATCCTAGACTTGGATTTTCTT
TTTTTTTTTTTTTTTTTTTAGATTTATTTATTGGTTATATGTAAGTACAC
TGTTGCCTGCCTCCGAANTCCANGACCACGGAGTTAGATTTTGTTATGGA
TGGGTGCCCCCCTCCAAAAGTTAGCTGAAAATAGAAGTGGGGAGCGTCTG
AACAACAATCTCTTGTTCTTACTCTCTGAGCCATCTCACCATCCCCATAC
TTGGACTCTCGGATTTTTGGATGAACACGCTGTGCACATAACAGTCTTGT
ACCTTTCTACCCTATGTTATGGGATATTTGCAGCCCCGTTGCTGACTGTT
TCTTTTCCCCATTGTCTCATGTTTTCCCTTTTCATACCTAACTCTTTTTC
TTTTTTAATTTCCACTTTTCTCTCTTTTTCATCTTTTAAAGATTGCAATA
CTTTCATCCAGAAAATTCTCTAGTTTTAATTCCTCTATAACATCTACTCT
CTTG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXATTCTGCAGGCAATAGGATCGAAACTGGGAAT
CACTCTTGGAGTATATGTAACCTATTACCCACAAAGGACATGGCATGGGT
GGTGTACTCCACTTATAGAGTGGGGTATTAAGCCATATAAGTACAAGTAT
AACCACTTCTACAAGTCCACAGTACTCCAAAGAAGCCAAATTAGCAAGTA
AGGTACCCAAAGAAGAAGCTTGATTAAGTTCTTTCTCAGTAAGGGGCGAA
ATAAAATTAGATATCTAGAGGTGCGATGGGATGGGAGGCGAACTGGGGTA
GAGAAATTTTTTTGTTACNGAGGAGAGCCGGCACAAGCCCCGANGAAGAN
AGAGTTTTTGAGTAAAATTTCCCAAAACCGAGNGACCCCCATAAGATATT
GTTATTATAGATAANGGGTGGGTGTCGCCCCCCCCCCAAAAANNTTTAAT
TTCTAAAACNTTGGGGGTCCTGTCTTGGGGGGGTCTTAATTATACGCGTA
TTCTCTCAGCCCGCTTAGCTTATGTTATTCCGCCGTATCCGGTCGTTCTA
TATTTAATCTCCATTTTTATATAAAAATAACTCTCGCCTCTCCTATAATT
ATTATATTATACGTATACACGCACATAACATATTTGTGCCTTTTTATATA
TTCAGCTCACTCCCCCTATAATTTTGCTACATAATTTTATAAATATTCCC
AGCCCTCGCTTATCCGCTTCTATTACACATCTCTCTAATTCCATTCTTCA
ACTTATTGTGTTTACGCGCACTTATTAGTGCGCCTTATATATATTGTATT
TCACCTCTTATTCGCCTCGGTCTATACCTGTACCACCACTAACATATTAT
CATTATCACCGGCGTATTATATATTATATACCCCACGCCACCCGCGGTGT
TCCTATTTTCTCAGCACTTATTATAAGTTACGCTGCCCTATATTTTAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no302_k17.b1 MSMg01no302_k17.b1 CHROMAT_FILE:
MSMg01no302_k17.b1 PHD_FILE: MSMg01no302_k17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:40:22 2005
         (304 letters)



>mm_chr7_13590687_13591390
          Length = 704

 Score =  576 bits (298), Expect = e-169
 Identities = 304/308 (98%), Gaps = 4/308 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctgacctcaccccccaaagtctggagccacccttccctcattgggcacctatggaggcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 tctgacctcaccccccaaagtctggagccacccttccctcattgggcacctatggaggcc 388

                                                                       
Query: 61  cagatggacctccctagggattttaggattccaatctaataaaggacattgggccagtac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 cagatggacctccctagggattttaggattccaatctaataaaggacattgggccagtac 328

                                                                       
Query: 121 atgcctcgtaggctttctgggctgtgggcttggggcttggtccctacgttcctgacttgc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 atgcctcgtaggctttctgggctgtgggcttggggcttggtccctacgttcctgacttgc 268

                                                                       
Query: 181 acttttgcggtgacctgagatttcctgagtaggtaggcacaatttgctttgatatcctag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 acttttgcggtgacctgagatttcctgagtaggtaggcacaatttgctttgatatcctag 208

                                                                       
Query: 241 acttggattttc----tttttttttttttttttttttagatttatttattggttatatgt 296
           ||||||||||||    ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 acttggattttctttttttttttttttttttttttttagatttatttattggttatatgt 148

                   
Query: 297 aagtacac 304
           ||||||||
Sbjct: 147 aagtacac 140


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 304
Length of database: 704
Length adjustment: 9
Effective length of query: 295
Effective length of database: 695
Effective search space:   205025
Effective search space used:   205025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)