BAC Information

Click to search

BAC

Clone NameMSMg01-302L09
Chromosome7 (Build37)
Map Location 129,652,266 - 129,652,773
singlet/doubletsinglet
Overlap genePrkcb1
Upstream geneUsp31, Scnn1g, Scnn1b, Cog7, Gga2, Ears2, Ubfd1, Ndufab1, Palb2, Dctn5, Plk1, Ern2, 2010110P09Rik, LOC668486
Downstream geneCacng3, 4930413G21Rik, Rbbp6, LOC628696, LOC100042977, LOC100042981, Tnrc6a, Slc5a11, Arhgap17, Lcmt1, Aqp8, Zkscan2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-302L09.T7 (MSMg01no302_l09.b1)MSMg01-302L09.TJ (MSMg01no302_l09.g1)
ACCAG428525AG428526
length732736
length of high quality
(start - end)
317 (44 - 360)509 (71 - 579)
definitionCHROMAT_FILE: MSMg01no302_l09.b1 PHD_FILE: MSMg01no302_l09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:40:25 2005CHROMAT_FILE: MSMg01no302_l09.g1 PHD_FILE: MSMg01no302_l09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:40:25 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTACAGGTTCTATTAAGAGGGCAGTTCATAGGCACTTCAGAATGAAAC
ATCTAGGGCTGAGAAGACAGCAAAATGGGCAAAGTGCTTTCTGCACAAGC
AAGAGGACTTGTGTTCAGACTCCCAGCGGCCACATGAAATTGGAACACCG
TGGTGTGTGCCTGTAACCCTAACACTGATCGTGAGTAATGGACAGGAGGA
TCCTGGAGCTTGCTGGCCAGTCAGTCAATCTAATAAAACTGTTCAGCCAC
TGAACAGTTAGCATAGGCACACTATAAGCTTAAGCTAATCAAATTATCCT
CCAGCCTTCAATGAATTATTGCCTTTCTTTCCCCGTGAGTGTATACTACA
CGCTGGGCTCTGGGGCTAACCTGAAAGAAAAAAGAAAATGGGTAGCCAGA
GTTCTTGGATGATGTTTCTTCTAATGTTCAAATTAAATGTTAAAATGATG
TTAAGACTTGCCTACCCTTTGTCTTATCCAAGCTGTCCGTTTTGGCTCAC
TCTTGCCCAGAATCAGTAAAAATTGAGCTTGGTGATATATTGGTCTCCTG
TCTGGTGTTCTTCTAAGATGGCTTGACTCCTGTAAGCGCTTCGTGAGAAC
CTGGCCCAAAGCTGAATTCTGCCTTGAAGTGCATTTTAAGCTCCAAAGAA
GCTAAACAGTGGTGGTGCCCAAGGTTATTTCC
TGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTCTCTATGGGGGAGGGAAACCAGCATTTGT
CGGGCTTCTGCACGAGCTCACCTTCTCCCTAAATGCCACCATCTTGATCA
CTAGAGTGATAGTACAGATATGGAGTGTCCCTGTCCCCAATGGGCTCGTG
TGTTAAAGGTTGGATCCCTCAGCAGTTGGGACAACTGAGAGTGGATGGAT
GACAACTATGATCATCATCATGGATCAACCCATGAGTTCACAGCTGAATG
GACTTTTAAGAAATGGTGCCTAGATGAAGGAAATGGGTTCCTGGGGATTT
GACTGTGAAGGGTAGAGCGTAACTCTGGCATCTTCCAGTTCCTTGTGCTG
GCCTGCAGATGTCATGAAGAGAATGGCTTTCTCCACAACACCCATCTACC
AGGATGTTTCTGCCTTGCCTAAAAGCAGTAGGGCTAGCCTAATAGGGTCT
GAAACTAATGATACCATCAGCCAGAATAAATTCTTTTTCCTTTTAGTTCA
TCTCTCTTAGACATGAACGTGTGTGTGTGTGTGTGTATTGTATGGTGTAT
ATATTTGTGAGTATAGGCGTGCCCACTTTTTTCATTAATTCCTTTTTTCC
CTTTCCTTATTAATCATTTATTAAACATAACGCCTTATACCCCTTCTATA
TTCATTATTCCCTTATCTTATAATTCGTCACTTATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no302_l09.g1 MSMg01no302_l09.g1 CHROMAT_FILE:
MSMg01no302_l09.g1 PHD_FILE: MSMg01no302_l09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:40:25 2005
         (509 letters)



>mm_chr7_129652066_129652973
          Length = 908

 Score =  870 bits (450), Expect = 0.0
 Identities = 495/510 (97%), Gaps = 3/510 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctctatgggggagggaaaccagcatttgtcgggcttctgcacgagctcaccttctccct 60
           ||||||| ||||| |||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 201 tctctat-ggggaaggaaaccagcatttgttgggcttctgcacgagctcaccttctccct 259

                                                                       
Query: 61  aaatgccaccatcttgatcactagagtgatagtacagatatggagtgtccctgtccccaa 120
           ||||||||||||| || |||||| |||||||||||||||| |||||||||||||||||||
Sbjct: 260 aaatgccaccatcctggtcactaaagtgatagtacagatacggagtgtccctgtccccaa 319

                                                                       
Query: 121 tgggctcgtgtgttaaaggttggatccctcagcagttgggacaactgagagtggatggat 180
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 320 tgggctcgtgtgttaaaggttggatccctcagcagttgggactactgagagtggatggat 379

                                                                       
Query: 181 gacaactatgatcatcatcatggatcaacccatgagttcacagctgaatggacttttaag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 gacaactatgatcatcatcatggatcaacccatgagttcacagctgaatggacttttaag 439

                                                                       
Query: 241 aaatggtg-cctagatgaaggaaatgggttcctggggatttgactgtgaagggtagagcg 299
           |||||| | |||||||||||||||||||||||||||||  |||||||||||||||||| |
Sbjct: 440 aaatgg-gacctagatgaaggaaatgggttcctggggacatgactgtgaagggtagagtg 498

                                                                       
Query: 300 taactctggcatcttccagttccttgtgctggcctgcagatgtcatgaagagaatggctt 359
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 499 taactctggcatcttccagttccttgtgctggcctgcagatgtcatgaagagaacggctt 558

                                                                       
Query: 360 tctccacaacacccatctaccaggatgtttctgccttgcctaaaagcagtagggctagcc 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 tctccacaacacccatctaccaggatgtttctgccttgcctaaaagcagtagggctagcc 618

                                                                       
Query: 420 taatagggtctgaaactaatgataccatcagccagaataaattctttttccttttagttc 479
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 619 taatagggtctgaaactaatgatgccatcagccagaataaattctttttccttttagttc 678

                                         
Query: 480 atctctcttagacatgaacgtgtgtgtgtg 509
           ||||||||||||||||||||||||||||||
Sbjct: 679 atctctcttagacatgaacgtgtgtgtgtg 708


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 509
Length of database: 908
Length adjustment: 10
Effective length of query: 499
Effective length of database: 898
Effective search space:   448102
Effective search space used:   448102
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)