BAC Information

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BAC

Clone NameMSMg01-303C15
Chromosome7 (Build37)
Map Location 95,640,841 - 95,641,199
singlet/doubletsinglet
Overlap genenone
Upstream geneTyr, Grm5, Ctsc, LOC100039756, Rab38
Downstream geneLOC100039924, LOC666598, EG621562, Tmem135, LOC100039969, Fzd4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-303C15.T7 (MSMg01no303_c15.b1)MSMg01-303C15.TJ (MSMg01no303_c15.g1)
ACCAG428835AG428836
length734735
length of high quality
(start - end)		360 (375 - 734)658 (76 - 733)
definitionCHROMAT_FILE: MSMg01no303_c15.b1 PHD_FILE: MSMg01no303_c15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:41:00 2005CHROMAT_FILE: MSMg01no303_c15.g1 PHD_FILE: MSMg01no303_c15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:41:00 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCATCTTTCTTGAATCAGCTTTCACCCATGAGAACAAGAATGAACTAT
CAATGCTCCCCACATTTCTTTTTACTTGCAAAGGATAATTCCAAGACGTG
TTCTATGTATGTTTAAGTCTAGATAGTTCCTAGTGGTGCTAAGTATCTGG
TTTTTATGGAGGTAATTTTCCATTTGATTCATCCCAGATTATTTCCTTAT
TCCTCTGGTGACGTTCTCTGGTTAACCTTCCAAGTAAATTACATTCATGC
AAATACAGGTCTTAGGAAGAAGGCAACCTAAGTTTGTTAAGACAGAGGTG
AACCTATTTTATAGATAGCATAACATGCCTAAATTGAACCATTTACAAAA
AGTCACAGTCAGGATGGATTCAGTGCTCATGAGCAAAGCTGTTAGTAGAA
GTGCCAAGTTGCTAAGATTCTCATGAAGTAGACAGAGAGCAGATCAGCAG
TAAATATGATTCTATCAAATTCAAACTTTTGCACACCAAAGGACACAATC
GGTAATGTGAAGAGGTGAACTACAGAATGCAAAATATATGTCCAAACTAT
TCACTGAAAAAAGTAATATGAAAATAAATAGGTACTCTAAAAACTCAATG
TCAACAATAATAACCTAATAAAAATGATCTGAAGAGATGCTCTTCCAATA
ACAAAATATCAATGGCCACATGTCTATGAAAAAT

CATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAG
AGAAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAA
ATCAAAACAACACTGAGATTCCACTTCACTCCAGTCAGAATGGCTAAGAT
CAAAAACTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGGGGAA
CACTCCTCCATTGTTGGTGGGATTGCAAGCTTGTACAACCACTCTGGAAA
TCAGTCTGGCGGTTCCTCAGAAAATTGGACATAGTACTACCAGAGGATCC
CGCAATACCTCTCCTGGGCATATATCCAGAAGATGTCCCAACCAGTAAGA
AGAACACATGCTCCACTATGTTCATAGCAGCCTTGTTTATAATAGCCAGA
AGCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAAT
GTGGTACATTTACACAATGGAATACTACTCAGCTATTAAAAAAATGAATT
TATGAAATTCCTTGGCAAATGGATGGACCTGGAGGGTATCATCCTGAGTG
AAGTAACCCAATCACAAAGGAACTGGCACAATATGTACTCACTGATAAGT
GGATATTAGCCCAGAAACTTAGGATACCCAAGATATAAGATATAACTTGC
CAAATGCATGAAATTCAAGAAGAACGAAGACCAAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no303_c15.b1 MSMg01no303_c15.b1 CHROMAT_FILE:
MSMg01no303_c15.b1 PHD_FILE: MSMg01no303_c15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:41:00 2005
         (360 letters)



>mm_chr7_95640640_95641399
          Length = 760

 Score =  663 bits (343), Expect = 0.0
 Identities = 355/359 (98%)
 Strand = Plus / Plus

                                                                       
Query: 2   tgcctaaattgaaccatttacaaaaagtcacagtcaggatggattcagtgctcatgagca 61
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 202 tgcctaaattgaaccatttacaaaaagtcacagtcaggatggattcagtgttcatgagca 261

                                                                       
Query: 62  aagctgttagtagaagtgccaagttgctaagattctcatgaagtagacagagagcagatc 121
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct: 262 aagctgttagtagaagtgccaagttgctaagattctcatgaggtagacagagaacagatc 321

                                                                       
Query: 122 agcagtaaatatgattctatcaaattcaaacttttgcacaccaaaggacacaatcggtaa 181
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 322 agcagtaaatatgattctatcaaactcaaacttttgcacaccaaaggacacaatcggtaa 381

                                                                       
Query: 182 tgtgaagaggtgaactacagaatgcaaaatatatgtccaaactattcactgaaaaaagta 241
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 tgtgaagaggtgaactacagaatgcaaaatatatgtccaaactattcactgaaaaaagta 441

                                                                       
Query: 242 atatgaaaataaataggtactctaaaaactcaatgtcaacaataataacctaataaaaat 301
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 atatgaaaataaataggtactctaaaaactcaatgtcaacaataataacctaataaaaat 501

                                                                      
Query: 302 gatctgaagagatgctcttccaataacaaaatatcaatggccacatgtctatgaaaaat 360
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 gatctgaagagatgctcttccaataacaaaatatcaatggccacatgtctatgaaaaat 560


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 360
Length of database: 760
Length adjustment: 9
Effective length of query: 351
Effective length of database: 751
Effective search space:   263601
Effective search space used:   263601
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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