BAC Information

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BAC

Clone NameMSMg01-303D09
Chromosome7 (Build37)
Map Location 136,261,477 - 136,261,760
singlet/doubletsinglet
Overlap geneLOC100043144
Upstream geneItgam, Itgax, Itgad, Cox6a2, LOC100043133, Armc5, Tgfb1i1, Slc5a2, BC017158, EG628781, Rgs10, LOC100043643, Tial1, Bag3, EG639030, Inpp5f, LOC100043651, 1110007A13Rik, Sec23ip, LOC210714
Downstream genePpapdc1a, Brwd2, LOC100043150
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-303D09.T7 (MSMg01no303_d09.b1)MSMg01-303D09.TJ (MSMg01no303_d09.g1)
ACCAG428871AG428872
length741740
length of high quality
(start - end)
328 (38 - 365)290 (67 - 356)
definitionCHROMAT_FILE: MSMg01no303_d09.b1 PHD_FILE: MSMg01no303_d09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:41:03 2005CHROMAT_FILE: MSMg01no303_d09.g1 PHD_FILE: MSMg01no303_d09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:41:04 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCCC
TGTTTTCCGGCATATACAGTTTGCAAGTCCAATGGGCCTCTCTTTCCAGG
GATGGCCGACTAGGCCATCTTTTGATATATATGCAGCTAGAGTCAAGAGC
TCCGGGGTACTGGTTAGTTCATAATGTTGTTCCACCTATAGGGTTGCAGA
TCCCTTTAGCTCCTTGGCTACTTTCTCTAGCTCCTCCATTGGGAGCCCTA
TGATCCATCCATTAGCTGACTGTGAGCATCCACTTCTGTGTTTGCTAGGC
CCCGGCATAGTCTCATTAGAGACAGCTACATCTGGCTCCTTTCAATAAAA
TCTTGCTAGTGTATGCACTGTTGTCAGCGTTTGCATGCTGATTATGGGGT
GGATCCCCCCCCACGCCTGTTTCTACATGGTCCATCCTTTCATCTCATCT
CTAAACTTTTCCTCCGTATCTCCTTCCATGGCCGTTTTGTTCCCCAATCT
AACGATAGTCATATTGTTCACCCTTTTACCTTCATCCTTCTTGAGCTTCA
TGTGTTCTGTTAATTATATCTTACATCATGGATACCCTGATTTTGTTCAT
AACATCCATTTATCAGCGTATTATTATTGCGCGAGACTCTTTGCCTACGT
GTAACTTTACCCTTTCACTTGCCCTTTCTTCCCCTTCCCTTTTCTTCCCA
CCTTGTAATCCCCTTTCCTTTCAATTTCTCTTTCACCCTTT
GTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXTCAGGGATTCATTCTTTGAGACAGCTGAGATTAG
GGGTGTGGAATTGTGCACTCTACAGCAGGCTCTAAGAGTCGGGCTTCATC
ACCAGCTGGACAATTGCTCGTAGACAGAATGATAATTACCAGTGATTTCA
TGAAAATCTCAGGAAGAGGTGCACTATTCAGAGATTCTGAAATGTGGCTC
CTTTTCTTCTGTCATCTTCTCTGCTGTTAAGGCTTTGAAGTCCATATATA
GATTCATTTCTGAGCATAATGGAGCAGGCAGAGTTCACAATGTGCAGTGA
ACATTCTAGGTACGAGATTAACCTCGTGGGGAATTTAATTTGTTTTGAAC
GCACAAACCCCCCCCACAGTGGGCCACAAGTATATTCTGTAAGGATCACC
CCGTTTCCTGGCCTGCGCCAGTAATAAAGGGGCAAATTACTGAGGAGTTA
CCACAACACCCTTCCTGTCTCCAACACTATTCAACCATAAAAGCACCATT
ACCATTGTTTTGCATGCCGCTCTTGTAATTAATCTACCATCCCCCTCCTC
TATAACTGAACATTAGGTACCTTACCGAGAATTGCGTTTATCACTACTAT
CACATAACTCGATGAATCCCGATTTGCCTTATCTGGCAGTCTGGTCACAG
CATGTCGTCTTCTGCCCAGCCTGCTTGTACCTAACCATTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no303_d09.g1 MSMg01no303_d09.g1 CHROMAT_FILE:
MSMg01no303_d09.g1 PHD_FILE: MSMg01no303_d09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:41:04 2005
         (290 letters)



>mm_chr7_136261277_136261966
          Length = 690

 Score =  526 bits (272), Expect = e-154
 Identities = 281/284 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcagggattcattctttgagacagctgagattaggggtgtggaattgtgcactctacagc 60
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 tcagggattcgttctttgagacagctgagattaggggtgtggaattgtgcactctacagc 425

                                                                       
Query: 61  aggctctaagagtcgggcttcatcaccagctggacaattgctcgtagacagaatgataat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 aggctctaagagtcgggcttcatcaccagctggacaattgctcgtagacagaatgataat 365

                                                                       
Query: 121 taccagtgatttcatgaaaatctcaggaagaggtgcactattcagagattctgaaatgtg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 taccagtgatttcatgaaaatctcaggaagaggtgcactattcagagattctgaaatgtg 305

                                                                       
Query: 181 gctccttttcttctgtcatcttctctgctgttaaggctttgaagtccatatatagattca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 gctccttttcttctgtcatcttctctgctgttaaggctttgaagtccatatatagattca 245

                                                       
Query: 241 tttctgagcataatggagcaggcagagttcacaatgtgcagtga 284
           |||||||||| |||||||||||||||| ||||||||||||||||
Sbjct: 244 tttctgagcagaatggagcaggcagagctcacaatgtgcagtga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 690
Length adjustment: 9
Effective length of query: 281
Effective length of database: 681
Effective search space:   191361
Effective search space used:   191361
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)