BAC Information

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BAC

Clone NameMSMg01-303G13
Chromosome7 (Build37)
Map Location 131,375,736 - 131,376,008
singlet/doubletsinglet
Overlap geneEG628779
Upstream geneSlc5a11, Arhgap17, Lcmt1, Aqp8, Zkscan2, LOC100043482
Downstream geneEG545999, LOC670828
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-303G13.T7 (MSMg01no303_g13.b1)MSMg01-303G13.TJ (MSMg01no303_g13.g1)
ACCAG429010AG429011
length752745
length of high quality
(start - end)
316 (43 - 358)274 (373 - 646)
definitionCHROMAT_FILE: MSMg01no303_g13.b1 PHD_FILE: MSMg01no303_g13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:41:19 2005CHROMAT_FILE: MSMg01no303_g13.g1 PHD_FILE: MSMg01no303_g13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:41:19 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTATCAGAGCTTTAAAGAAGACCTAATACCAATGCTCTTCAAACAATTC
CACAAAATAGAAACAGGAGGAACACTACTAAATTTGTTCTATGAAGCCAC
AATTACAATTATACCTAAACCACACACTGACCAAACAAAACAAGAGAACT
TCTGACTAGTCTCCCTTATGAACATTGATGCAAAAATACTCAATAAAATT
CTTGCCAACCGAATCCAAGAGAGAGCTATGTCATGGTCCTGACAGCAAAA
TCTTTCTGGCATATGCAATAGTGTCTGGGTTTGGTGGTTGTATATGGGAT
GGATCCCTTTGTATGGCACCCCCCCCCATGGTCTTTCCTTCTGTCTCAGC
TCTGAACTTTGCGTCTGTAATTCTTTCCATGGGTATTTTGTTCCCCGTTC
TAAGAAGGAGCAAAGTATCTACACTTTGGTCTTCCTTCTTCTTGAGTTTC
ATGAGTTTTGCAAATTGTATCTTGGATATTCTAAGTTTCTGGTTTAATAT
CTACTTATCAGTGAGTGCATATCATGTGTGTTCTTTTGCGATTGGGTTAC
CTCACTCAGGATGATATTCCCCAGATTCCTCCATTTGCCTAACAATTTCA
TGAATTCATTGTTTCTTATTGCTGACTACCACTCCTTTACGTAAATGTAC
CACATTACCCTATCCACCCCTCTGCTGACAGACAATTGTGACTCTTTCAG
TG
GXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXTCCCAAAAAAATTCTATTTATTCATTTCACAAATAAGGTGCAAA
TGATGAACCTTTTCCCCTAGCACAAACACATTCAGGATGAAGTTGTCATT
CTACCTTCCCAGAGTCTCCTTTATTGCCAGATCCCAATTCCCAGTGACTC
CCTAAGGAAATCCCGACAGCCCTTGCTTTGCAGGATGAAGGGGATTAATT
ACTGTGTCTGCTGCCAGCCAGGATTTCTGCTGCTCAAGAAACTCTCATTT
CTTGTGCATCGATTTTTAAGTGATGGTATAGACAACCTGTCGAGAGAGTT
TGCATTTTCCAGATGCCTCATCCTCTCCCAATTACAGGACTCTTTCAGAT
TGTAAAATTACAGTGGAGATGTCGAGGGATAGAAGAAGAGCACCTGTCAT
CTAGATTGACCATATTGCACTGTGTTAAGGTCATATTTCCCGACTGGCAG
TAACAGATTGATAATGCATTCCCACCACGCTGTTGTTTTGTAGGAGATCT
GTCTTGGCAAAAATCTCAGAGGAGTCAAGTGGGTGTTGAAAGTCCTGATG
TAAGGAAGAAGAATCAGTTATGTTCTCCTGTGCTTTAGGCAAGCAAAATT
ATCTATTGTCCCAATTTCCTGCAATCACCCCCACAGACTTCGCTCATTCA
ACAAACTTCCCTGAGTACCAGCAATGGATTGTATTGATGTTGGGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no303_g13.g1 MSMg01no303_g13.g1 CHROMAT_FILE:
MSMg01no303_g13.g1 PHD_FILE: MSMg01no303_g13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:41:19 2005
         (274 letters)



>mm_chr7_131375536_131376208
          Length = 673

 Score =  507 bits (262), Expect = e-148
 Identities = 271/274 (98%), Gaps = 1/274 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctctcccaattacaggactctttcagattgtaaaattacagtggagatgtcgagggatag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctctcccaattacaggactctttcagattgtaaaattacagtggagatgtcgagggatag 260

                                                                       
Query: 61  aagaagagcacctgtcatctagattgaccatattgcactgtgttaaggtcatatttcccg 120
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aagaagagcacctgtcgtctagattgaccatattgcactgtgttaaggtcatatttcccg 320

                                                                       
Query: 121 actggcagtaacagattgataatgcattcccaccacgctgttgttttgtaggagatctgt 180
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 321 actggcagtaacagattgataatgcattcccaccacactgttgttttgtaggagatctgt 380

                                                                       
Query: 181 cttggcaaaaatctcagaggagtcaagtgggtgttgaaagtcctgatgtaaggaagaaga 240
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cttggcaaaa-tctcagaggagtcaagtgggtgttgaaagtcctgatgtaaggaagaaga 439

                                             
Query: 241 atcagttatgttctcctgtgctttaggcaagcaa 274
           ||||||||||||||||||||||||||||||||||
Sbjct: 440 atcagttatgttctcctgtgctttaggcaagcaa 473


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 274
Length of database: 673
Length adjustment: 9
Effective length of query: 265
Effective length of database: 664
Effective search space:   175960
Effective search space used:   175960
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)