Query= MSMg01no303_h19.b1 MSMg01no303_h19.b1 CHROMAT_FILE:
MSMg01no303_h19.b1 PHD_FILE: MSMg01no303_h19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:41:25 2005
(701 letters)
>mm_chr7_145571198_145572298
Length = 1101
Score = 1282 bits (663), Expect = 0.0
Identities = 690/699 (98%), Gaps = 3/699 (0%)
Strand = Plus / Plus
Query: 5 gaattcaagtggagtgttgcagtttctcagtgagctttcacgccaaacataatagaagat 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaagtggagtgttgcagtttctcagtgagctttcacgccaaacataatagaagat 264
Query: 65 cacaagacacagtgcgctttcacgcacaatatagatcaaacacactagacaaagaaatgt 124
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 265 cacaagacacagtgcgctttcacgcacaacatagatcaaacacactagacaaagaaatgt 324
Query: 125 cagtaactccaggacagcccacaagactccccaggaggtgcttggtctcatcagaggaaa 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 cagtaactccaggacagcccacaagactccccaggaggtgcttggtctcatcagaggaaa 384
Query: 185 gcatgcgtttaacatttacataatgcaggcaaaacaaccactctg-tccagctagcctct 243
|||||||||||||||||||||||||||||||||||||||||| || |||||| |||||||
Sbjct: 385 gcatgcgtttaacatttacataatgcaggcaaaacaaccact-tgttccagccagcctct 443
Query: 244 ctgatgctatgataaccactctgaccaaaaacaaactgggggaggggggaaagtttagtt 303
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ctgatgctgtgataaccactctgaccaaaaacaaactgggggaggggggaaagtttagtt 503
Query: 304 ggctttcaggtcccagtccaccattgacagatgcaaagtcaggagctcaggtaagaacct 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 ggctttcaggtcccagtccaccattgacagatgcaaagtcaggagctcaggtaagaacct 563
Query: 364 ggaggcagcaactgcagcagagatcaaggagaattctatcctgctcactggcttgctccc 423
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 ggaggcagtaactgcagcagagatcaaggagaattctatcctgctcactggcttgctccc 623
Query: 424 actgcctcgctcagctcagcttgctttcttacacagaaggggacaggacaggcactctta 483
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 624 actgcctcgctcagctcagctcgctttcttacacagaaggggacaggacaggcactctta 683
Query: 484 catcaaccattaatcaagcaaatgccttacagatatgtccacagatcaatctgatggagg 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 catcaaccattaatcaagcaaatgccttacagatatgtccacagatcaatctgatggagg 743
Query: 544 caattcctcagtggagattccctcttccctgctacgtttcaacttgacaacaactaacca 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 caattcctcagtggagattccctcttccctgctacgtttcaacttgacaacaactaacca 803
Query: 604 acacaccagttttaaaaaaggaaaa-ttctgtctaccctaatagaaaaaagagaaaattg 662
||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct: 804 acacaccagttttaaaaaaagaaaaattctgtctaccctaatagaaaaaagagaaaattg 863
Query: 663 cataaaaatgtcaacattgcatcatggggagaaaactga 701
|||||||||||||||||||||||||||||||||||||||
Sbjct: 864 cataaaaatgtcaacattgcatcatggggagaaaactga 902
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 701
Length of database: 1101
Length adjustment: 10
Effective length of query: 691
Effective length of database: 1091
Effective search space: 753881
Effective search space used: 753881
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no303_h19.g1 MSMg01no303_h19.g1 CHROMAT_FILE:
MSMg01no303_h19.g1 PHD_FILE: MSMg01no303_h19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:41:25 2005
(667 letters)
>mm_chr7_145622950_145624013
Length = 1064
Score = 1237 bits (640), Expect = 0.0
Identities = 660/668 (98%), Gaps = 5/668 (0%)
Strand = Plus / Minus
Query: 1 aacaccagtggggaaagcccaccaccaccttcttccttttgtggggaaaacaaactgtcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 864 aacaccagtggggaaagcccaccaccaccttcttccttttgtggggaaaacaaactgtcc 805
Query: 61 tcagagctgggcatgtttggctgagagctggatggtcagaaaatgggg-aaaatctttct 119
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 804 tcagagctgggcatgtttggctgagagctggatggtcagaaaatggggaaaaatctttc- 746
Query: 120 tattagtgtggaagaggaaagtggttgtgctgactgcgcacatatctgacagaggtagag 179
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 745 --ttagtgtggaagaggaaagtggttgtgctgactgcgcgcatatctgacagaggtagag 688
Query: 180 tttcactgatgctagaagaaataccattcccactcacccttctgttgttaaagtagcttt 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 687 tttcactgatgctagaagaaataccattcccactcacccttctgttgttaaagtagcttt 628
Query: 240 gtgagagtgtgttccaataactatcgcccccccccatttttattcaataactaacagttg 299
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 627 gtgagagtgtgttccaataactatcg-ccccccccatttttattcaataactaacagttg 569
Query: 300 tatcaagtccttttgccagggtgggcattcaaattccttcttccctgtcatttgaaagca 359
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 568 tatcaagtccttttgccagggtgggcattcaaattccttcttccttgtcatttgaaagca 509
Query: 360 gcctaggccacctgcagagctggaaggaagaagccagaagctgttctctcaaaatgacag 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 gcctaggccacctgcagagctggaaggaagaagccagaagctgttctctcaaaatgacag 449
Query: 420 agaagcaagccttgtgaatggttgactggttttaaatgactgacacataattaataaggg 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 agaagcaagccttgtgaatggttgactggttttaaatgactgacacataattaataaggg 389
Query: 480 ggatggcttctgtttgctcagtgtctttacaaagcacaataggtcagatcacacaacagc 539
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 388 ggatggcttctgtttgctcagtgtctttacaaagcacaagaggtcagatcacacaacagc 329
Query: 540 cacttggcagcttgaactcataaaggtctggttagtcccaagaggtgtcaggattccaca 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 cacttggcagcttgaactcataaaggtctggttagtcccaagaggtgtcaggattccaca 269
Query: 600 ttaactccttgtggttttaatgagctatatgtgtgacagggtgattctgtggttttctgt 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 ttaactccttgtggttttaatgagctatatgtgtgacagggtgattctgtggttttctgt 209
Query: 660 tatcaagg 667
||||||||
Sbjct: 208 tatcaagg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 667
Length of database: 1064
Length adjustment: 10
Effective length of query: 657
Effective length of database: 1054
Effective search space: 692478
Effective search space used: 692478
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
