BAC Information

Click to search

BAC

Clone NameMSMg01-303L16
Chromosome7 (Build37)
Map Location 19,681,917 - 19,682,570
singlet/doubletsinglet
Overlap geneSix5
Upstream geneIgfl3, LOC671190, Mill1, Psg18, LOC546936, Psg28, LOC666831, EG574429, EG232930, Psg25, EG545925, Psg23, Psg21, EG434540, BC050099, LOC666863, Sycp1-ps1, Psg19, Psg17, Mill2, Pglyrp1, C530028I08Rik, Nova2, Nanos2, P42pop, Irf2bp1, Foxa3, Sympk, Rshl1, Dmwd, Dmpk
Downstream geneEG243866, Fbxo46, Qpctl, Snrpd2, Gipr, Eml2, Gpr4, Opa3, Vasp, C79127, Rtn2, Fosb, D830036C21Rik, Ercc1, Cd3eap, Ppp1r13l, Ercc2, Klc3, Ckm, Mark4, 4933417E01Rik, Bloc1s3, Trappc6a, Nkpd1, BC024868, Gemin7, Zfp296, Sfrs16, Relb, Clptm1, Apoc2, Apoc4, Apoc1, Apoe, Tomm40, Pvrl2, Bcam, Cblc, Bcl3, Ceacam16, Ceacam19, Pvr, 2210010C17Rik, EG243872, Ceacam20, Nlrp9b, EG667040
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-303L16.T7 (MSMg01no303_l16.b1)MSMg01-303L16.TJ (MSMg01no303_l16.g1)
ACCAG429236AG429237
length7501,127
length of high quality
(start - end)		658 (42 - 699)---
definitionCHROMAT_FILE: MSMg01no303_l16.b1 PHD_FILE: MSMg01no303_l16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:41:43 2005CHROMAT_FILE: MSMg01no303_l16.g1 PHD_FILE: MSMg01no303_l16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:41:43 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CTCTGGTCCTGGCCCCTCAGACAGGAGAGGTTCGACTGGATGAGGCTCAG
TCTGAGGCCCCTGAGACCAAAGGGGTTCATGGGACTACTGGAGAGGAAAT
CCCAGGAGCCCTGCCCCAAGTAGTCCCAGGCCCCCCACCTGCCTCCACCT
TTCCTCTGACCCCGGGAGCTGTGCCTGCTGTGGCTGCTCCTCAGGTTGTA
CCGCTCTCCCCTTCTTCTGGGTACCCAACAGGCCTGAGCCCCACCTCCCC
ACGGCTGAACTTGCCCCAGGTGGTGCCCACCTCTCAGGTGGTAACCCTGC
CTCAGGCTGTGGGGCCACTCCAGCTGTTGGCAGCTGGGCCAGGCAGTCCT
GTGAAGGTGGCAGCTGCAGCGGGGCCTACCAATGTGCACCTGATAAACTC
TAGTGTGGGAGTGACTGCGCTGCAACTTCCCTCGTCCACTGCTCCAGGTA
CCCTTTCTGCTTTCTTGGGGTCTGAGTGGGCTTGGGGAGCAGGTGTCTCC
CACCTGATAGTCTCTTGGAGTTAAGCCTACTGGCACCCCTGCCTGCCACC
CAGCATCTTCCACTCCACCTCTTTTCTCTACAGGAAACTTCCTCCTGGCC
AACCCTGTGTCTGGTAGCCCCATTGTCACTGGGGTAGCTGTGCAGCAGGG
CAAGATCATCCTCACTGCCACCTTCCCCACCAGCATGCTCGTTCTCCAGG


CCTTCTAAGGTTTGCCTNATGANTAAAANACCACGGATAACTNCACGCNA
GAAGGNGGAAGAGGAGGGAGAGGTTTTTCANAAGAAAAAGAGGGGGNGAT
GTNGATATAAGGGGGTATGTGTTAGCAAATATTTATTGACGACCTGTATT
TGTTTCCCCCACACCACCCAGCAGACCACCTAATAATAACGTGTGTTCTC
GCCTTTTTTACTTTCTCGTCGTTTATTATTCTCCAGCTATCCTCTACACT
AACCGGCGCGGAAGGTGAGTACGCCGCCGGTGCCGCCGACGCACTACGCG
GTACCTGGTGCCGCGTGTGCGCCGTATATTTGGGCTGTTTTGTATCCTCC
CCCTCCCACTTCCCCCCCTTTCCGATTCTCCGCCCTTATGTTGTTCCACT
CTTACCACCACCACTACCCCCCGCGGATGTCACCTCTTTTTTTTTATAAA
ATATAGAGATATACATGGCACACCAGCCCAATACCAACAAGGCTGCTAGC
GGAGCGGACCCCCACACCGCGGCAGGAGCGCGACAACCCCAACTGAGCGC
GGCCCCGCGACAAACAATGATTTTTCCCCACCCCCCTTCTGTCTCGTACT
ACACAACACGCTCGAATCATTTGTCGCCCCCTTCCTGTTCTCCTCCCCTC
CCACCTCCCCACGCCGCCCACCTCTTCTCACGGCCGCAACCGACACACAC
CCACCACCCCGAATCACTCACTCATATTTACCTCTACTCTTCACACAACG
TCACCTCTCTCTTNGCTCATGCGTCACGACGCAGTTGTGCACTCCCCTTA
ACTCACACNGCGCCCCGCCCTCTCCGCCTCGCCCATGTTTATCACACACC
GCCGCCGACAATTTATCTGTGCGCGCTCCCCGACCCCATAATTGTCTACC
CGCTGTCATTGCGAGTTACCCACTGATCATATAGCGACTGCCCGACCTCG
CTCCACGACACGTCCGCCCGCACATCAGGGCCAGTAGCCAGCCCACAGCG
ACAAGTGAGCAAGCGGACACAGTAGAATGTCACTCACCCCTGCTACTATA
TCTTGCTCGCTCATCTTGCTTAGCCGCCCCACCCGCACCTGTTCTAGCTC
ACCACCTCACCAACCATCTTATTTCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no303_l16.b1 MSMg01no303_l16.b1 CHROMAT_FILE:
MSMg01no303_l16.b1 PHD_FILE: MSMg01no303_l16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:41:43 2005
         (658 letters)



>mm_chr7_19681713_19682770
          Length = 1058

 Score = 1257 bits (650), Expect = 0.0
 Identities = 653/654 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctctggtcctggcccctcagacaggagaggttcgactggatgaggctcagtctga 64
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctctggtcctggaccctcagacaggagaggttcgactggatgaggctcagtctga 264

                                                                       
Query: 65  ggcccctgagaccaaaggggttcatgggactactggagaggaaatcccaggagccctgcc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ggcccctgagaccaaaggggttcatgggactactggagaggaaatcccaggagccctgcc 324

                                                                       
Query: 125 ccaagtagtcccaggccccccacctgcctccacctttcctctgaccccgggagctgtgcc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ccaagtagtcccaggccccccacctgcctccacctttcctctgaccccgggagctgtgcc 384

                                                                       
Query: 185 tgctgtggctgctcctcaggttgtaccgctctccccttcttctgggtacccaacaggcct 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tgctgtggctgctcctcaggttgtaccgctctccccttcttctgggtacccaacaggcct 444

                                                                       
Query: 245 gagccccacctccccacggctgaacttgccccaggtggtgcccacctctcaggtggtaac 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gagccccacctccccacggctgaacttgccccaggtggtgcccacctctcaggtggtaac 504

                                                                       
Query: 305 cctgcctcaggctgtggggccactccagctgttggcagctgggccaggcagtcctgtgaa 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 cctgcctcaggctgtggggccactccagctgttggcagctgggccaggcagtcctgtgaa 564

                                                                       
Query: 365 ggtggcagctgcagcggggcctaccaatgtgcacctgataaactctagtgtgggagtgac 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ggtggcagctgcagcggggcctaccaatgtgcacctgataaactctagtgtgggagtgac 624

                                                                       
Query: 425 tgcgctgcaacttccctcgtccactgctccaggtaccctttctgctttcttggggtctga 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tgcgctgcaacttccctcgtccactgctccaggtaccctttctgctttcttggggtctga 684

                                                                       
Query: 485 gtgggcttggggagcaggtgtctcccacctgatagtctcttggagttaagcctactggca 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 gtgggcttggggagcaggtgtctcccacctgatagtctcttggagttaagcctactggca 744

                                                                       
Query: 545 cccctgcctgccacccagcatcttccactccacctcttttctctacaggaaacttcctcc 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 cccctgcctgccacccagcatcttccactccacctcttttctctacaggaaacttcctcc 804

                                                                 
Query: 605 tggccaaccctgtgtctggtagccccattgtcactggggtagctgtgcagcagg 658
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 tggccaaccctgtgtctggtagccccattgtcactggggtagctgtgcagcagg 858


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 658
Length of database: 1058
Length adjustment: 10
Effective length of query: 648
Effective length of database: 1048
Effective search space:   679104
Effective search space used:   679104
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |