BAC Information

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BAC

Clone NameMSMg01-303P23
Chromosome7 (Build37)
Map Location 149,753,415 - 149,948,853
singlet/doubletdoublet
Overlap geneH19, Igf2, Igf2as, Ins2, EG640264
Upstream geneAp2a2, Muc6, LOC100039649, Muc2, Muc5ac, Muc5b, Tollip, EG623757, Brsk2, 2700078K21Rik, Dusp8, LOC100039728, EG668763, LOC100043616, EG665295, LOC100043617, Krtap5-2, LOC100039757, LOC100039767, EG665305, Krtap5-5, EG640223, LOC672428, LOC100039800, LOC100043627, LOC100043629, ENSMUSG00000038442, Krtap5-1, Krtap5-4, LOC270015, 6330512M04Rik, Ctsd, Syt8, Tnni2, Lsp1, ENSMUSG00000043795, Tnnt3, Mrpl23, Nctc1
Downstream geneEG624121, Th, Ascl2, Tspan32, R74862, Cd81, Tssc4, Trpm5, Kcnq1, Cdkn1c, Slc22a18, Phlda2, Nap1l4, Cars, Tnfrsf26, Tnfrsf22, Tnfrsf23, Osbpl5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-303P23.T7 (MSMg01no303_p23.b1)MSMg01-303P23.TJ (MSMg01no303_p23.g1)
ACCAG429420AG429421
length744742
length of high quality
(start - end)		702 (39 - 740)647 (68 - 714)
definitionCHROMAT_FILE: MSMg01no303_p23.b1 PHD_FILE: MSMg01no303_p23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:42:03 2005CHROMAT_FILE: MSMg01no303_p23.g1 PHD_FILE: MSMg01no303_p23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:42:03 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(149,948,156 - 149,948,853)(149,753,415 - 149,754,061)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTACAGAATCCGCGGAATTCAC
TAAGATCTTAAGCCCCAGTAAGAACCTGTTGAAAGTTTTTTGCTCCATTG
AGGATCTGAGGAAGTCCTAAGGCCTCAATAAGACTTTGGAGAAGGGCTTA
GATCTCATGAAAAACTAGAGAAAGCCTTAAGACCCATTGAGAACCTGCTG
AAAGTTCTAGGTCACAATAAGAACATTGCTTTAGATCTAAAGCAACCTGC
CAAAAGATTTATAGAACTTGTGAGAGTTTGGCAAAATTTTCAGGCCCTTG
TAGCCAGCAATGCCCTTTGTAACACCTTAGACTTCAGTGAGAACCTATTT
TGGCTCAAAGACCCAGAGAAAACATGGGCAAAGCCTAAGATCTCAGTGAG
TATCTGCAGAAGGCCTCACACCCCAGTGAGAATCTGAGGATTCCTTAGAC
CCCAGTGACAAACACAGAAGCCCTTAGACCCTAGGGATTACCTGGATGAG
GCCATTGACCCCAGTGAGAACCTGGTAAAGCATTAAGACCCAGTGAGAAT
ATGGGAAAGACCTTAGGCCAGATTAAGGATCTAAGCAATGCCTTTAGCTC
TACTGAAAAACTGTAAAAGGTTTTAGGTCACAGTGAGAACACAAAGAAGC
TCAACAGACACACTAAAATCTGCCCATGCCTTCATAGACTCTGAGAAATT
GGTTATCCTTTCAGGTCACAGACCCTGGTTAATGTCTAAGGACN

AGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXAATCCTTGGTTCTACGTAAACAAGATATGGAGG
ACGTGCCTAGCACTTGGGAGGTAGAAGCAGGACGAATAGGAGTTCAAGGT
TATCTTCAGCTACCTAGTGAGTTTTGAAGGCTACATGAGATTGTCTCACA
AAATCAAAATAAGCAAATAAGAACACATCTGTGCTAGTGGAGTAGGAAGG
TGAGGGCTTCTGGAGCTAAAGAAAAATAAAACCAGGAAACATGGCTCATG
TTCTATGGACTGGTGACTGTCAGGGCTCATCAACTGAAGGTTAGGGCTGG
TGGGAAGCATGCGACCTTTCTGACACAGTCTCTTTTTCTGGAACTTTTCC
CAGAGGCACCCTGCCCACCCCTTTCCTATTTTCTGCAACTTTCCTGCATG
GAATGGGGACACTGCCCTTAAAGAACAATGGTGACCTCCTGCCACTGTTT
AGCCTCCTTCCCTGGCTCCAGGGGAGGCTAAGAGTCCTCACACCCATTCC
CACCTCCATGAATAAGAGCCTTGCCTGCACCCACTGAGTGCTATGGGAGT
CTGGGTTCTGTAGACTCTGCTGCCATTTTGAAAGTGCCACCCTAGTAAAA
GGAGGATGGTTTTTTCTCTCTGGAAGTGGGGACTTCAAGTTTCATCATAA
GGAACACCTACTTGTTTAAAACACGAGTCACCAGCATGCTGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no303_p23.b1 MSMg01no303_p23.b1 CHROMAT_FILE:
MSMg01no303_p23.b1 PHD_FILE: MSMg01no303_p23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:42:03 2005
         (702 letters)



>mm_chr7_149947952_149949053
          Length = 1102

 Score = 1288 bits (666), Expect = 0.0
 Identities = 690/698 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcactaagatcttaagccccagtaagaacctgttgaaagttttttgctccattgag 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 902 gaattcactaagatcttaagccccagtaagaacctgttgaaagttttttgctccattgag 843

                                                                       
Query: 65  gatctgaggaagtcctaaggcctcaataagactttggagaagggcttagatctcatgaaa 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 842 gatctgaggaagtcctaaggcctcaataagactttggagaagggcttagatctcatgaaa 783

                                                                       
Query: 125 aactagagaaagccttaagacccattgagaacctgctgaaagttctaggtcacaataaga 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 782 aactagagaaagccttaagacccattgagaacctgctgaaagttctaggtcacaataaga 723

                                                                       
Query: 185 acattgctttagatctaaagcaacctgccaaaagatttatagaacttgtgagagtttggc 244
           | ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 722 atattgctttagatctaaagcaacctgccaaaagatttacagaacttgtgagagtttggc 663

                                                                       
Query: 245 aaaattttcaggcccttgtagccagcaatgccctttgtaacaccttagacttcagtgaga 304
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 662 aaatttttcaggcccttgtagccagcaatgccctttgtaacaccttagacttcagtgaga 603

                                                                       
Query: 305 acctattttggctcaaagacccagagaaaacatgggcaaagcctaagatctcagtgagta 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 602 acctattttggctcaaagacccagagaaaacatgggcaaagcctaagatctcagtgagta 543

                                                                       
Query: 365 tctgcagaaggcctcacaccccagtgagaatctgaggattccttagaccccagtgacaaa 424
           |||||||||||||| | || ||||||||||||||||||||||||||||||||||||||||
Sbjct: 542 tctgcagaaggccttatacaccagtgagaatctgaggattccttagaccccagtgacaaa 483

                                                                       
Query: 425 cacagaagcccttagaccctagggattacctggatgaggccattgaccccagtgagaacc 484
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 482 cacagaagcccttagaccctagggattacctggatgaggccattggccccagtgagaacc 423

                                                                       
Query: 485 tggtaaagcattaagacccagtgagaatatgggaaagaccttaggccagattaaggatct 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 tggtaaagcattaagacccagtgagaatatgggaaagaccttaggccagattaaggatct 363

                                                                       
Query: 545 aagcaatgcctttagctctactgaaaaactgtaaaaggttttaggtcacagtgagaacac 604
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 362 aagcaatgcctttagctctactgaaaaactgtaaaatgttttaggtcacagtgagaacac 303

                                                                       
Query: 605 aaagaagctcaacagacacactaaaatctgcccatgccttcatagactctgagaaattgg 664
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 aaagaagctcaacagacacactaaaatctgcccatgccttcatagactctgagaaattgg 243

                                                 
Query: 665 ttatcctttcaggtcacagaccctggttaatgtctaag 702
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 242 ttatcctttcaggtcacagaccctggttaatgtctaag 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 40
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 702
Length of database: 1102
Length adjustment: 10
Effective length of query: 692
Effective length of database: 1092
Effective search space:   755664
Effective search space used:   755664
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)

Query= MSMg01no303_p23.g1 MSMg01no303_p23.g1 CHROMAT_FILE:
MSMg01no303_p23.g1 PHD_FILE: MSMg01no303_p23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:42:03 2005
         (647 letters)



>mm_chr7_149753215_149754261
          Length = 1047

 Score = 1205 bits (623), Expect = 0.0
 Identities = 641/647 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aatccttggttctacgtaaacaagatatggaggacgtgcctagcacttgggaggtagaag 60
           |||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 201 aatccttggttctacgcaaacaagatatggaggacatgcctagcacttgggaggtagaag 260

                                                                       
Query: 61  caggacgaataggagttcaaggttatcttcagctacctagtgagttttgaaggctacatg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 caggacgaataggagttcaaggttatcttcagctacctagtgagttttgaaggctacatg 320

                                                                       
Query: 121 agattgtctcacaaaatcaaaataagcaaataagaacacatctgtgctagtggagtagga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agattgtctcacaaaatcaaaataagcaaataagaacacatctgtgctagtggagtagga 380

                                                                       
Query: 181 aggtgagggcttctggagctaaagaaaaataaaaccaggaaacatggctcatgttctatg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aggtgagggcttctggagctaaagaaaaataaaaccaggaaacatggctcatgttctatg 440

                                                                       
Query: 241 gactggtgactgtcagggctcatcaactgaaggttagggctggtgggaagcatgcgacct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gactggtgactgtcagggctcatcaactgaaggttagggctggtgggaagcatgcgacct 500

                                                                       
Query: 301 ttctgacacagtctctttttctggaacttttcccagaggcaccctgcccacccctttcct 360
           ||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||
Sbjct: 501 ttctgacacagtctctttttctggaacttttcccagaggcaccctgtttacccctttcct 560

                                                                       
Query: 361 attttctgcaactttcctgcatggaatggggacactgcccttaaagaacaatggtgacct 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 attttctgcaactttcctgcatggaatggggacactgcccttaaagaacaatggtgacct 620

                                                                       
Query: 421 cctgccactgtttagcctccttccctggctccaggggaggctaagagtcctcacacccat 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cctgccactgtttagcctccttccctggctccaggggaggctaagagtcctcacacccat 680

                                                                       
Query: 481 tcccacctccatgaataagagccttgcctgcacccactgagtgctatgggagtctgggtt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tcccacctccatgaataagagccttgcctgcacccactgagtgctatgggagtctgggtt 740

                                                                       
Query: 541 ctgtagactctgctgccattttgaaagtgccaccctagtaaaaggaggatggttttttct 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ctgtagactctgctgccattttgaaagtgccaccctagtaaaaggaggatggttttttct 800

                                                          
Query: 601 ctctggaagtggggacttcaagtttcatcataaggaacacctacttg 647
           |||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 801 ctctggaagtggggacctcaagtttcatcataaggaacacctacttg 847


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 647
Length of database: 1047
Length adjustment: 10
Effective length of query: 637
Effective length of database: 1037
Effective search space:   660569
Effective search space used:   660569
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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