Query= MSMg01no304_n18.b1 MSMg01no304_n18.b1 CHROMAT_FILE:
MSMg01no304_n18.b1 PHD_FILE: MSMg01no304_n18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:44:03 2005
(777 letters)
>mm_chr7_100884027_100885205
Length = 1179
Score = 1394 bits (721), Expect = 0.0
Identities = 764/779 (98%), Gaps = 2/779 (0%)
Strand = Plus / Plus
Query: 1 aacacgtttctaattgaatgagacttacaaaaatccttgtatatgtttaaccatagcaat 60
||||||||| |||||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct: 201 aacacgtttgtaattgaatgagacttacaaaaatacatgtatatgtttaaccatagcaat 260
Query: 61 tattgttatttaataacaacttaaaaataaaaattgaaagtgaacaacatatcctcaatg 120
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 261 tattgttatttaataacaacttaaaaataaaaattgaaagtgagcaacatatcctcaatg 320
Query: 121 taatttaagtctctacattcagtcaaaatatcaaagtactatgtttctaccaataattag 180
||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 321 taagttaagtctctacattcagtcaaaatagcaaagtactatgtttctaccaataattag 380
Query: 181 tacattaaaagcagtggagaattctaaattgttttgaaatatctattcctggctacaggg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tacattaaaagcagtggagaattctaaattgttttgaaatatctattcctggctacaggg 440
Query: 241 ttcatatatattcccatgaatatttttacagcagagaagttggaatgaaacttccctatc 300
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 441 ttcatatatattcccatgaatatttttacagcagagaagttagaatgaaacttccctatc 500
Query: 301 attatatattattatatactgggcacataaaggaaagaactccacacgtaaaacaaagtt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 attatatattattatatactgggcacataaaggaaagaactccacacgtaaaacaaagtt 560
Query: 361 aataaaaattttccttccagcaaagcaagcattatgaaaaaaa--ttacagtctttctaa 418
||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 561 aataaaatttttccttccagcaaagcaagcattatgaaaaaaaaattacagtctttctaa 620
Query: 419 actgaggttttggattgagagtatactttaaatacaagaggagacttttatttacaaagc 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 actgaggttttggattgagagtatactttaaatacaagaggagacttttatttacaaagc 680
Query: 479 atatttttacatgtgggaattcatgagctcaggaagttcaaatgatgttttcaaggtttc 538
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 681 atatttttacatgtgggaattcatgagctcagaaagttcaaatgatgttttcaaggtttc 740
Query: 539 acaggaaaattgatgcaggaaagtgatctctgggactagggactcttgcatttcagtagt 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 acaggaaaattgatgcaggaaagtgatctctgggactagggactcttgcatttcagtagt 800
Query: 599 ggtatgtgagtctttgtctcgttattttaaataaatgccaggttttgacatttagattat 658
|| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 801 gggatgtgagtctttgtctcattattttaaataaatgccaggttttgacatttagattat 860
Query: 659 agaaaaattccaaatacagagtaactgcattgccaagtttcagtaattattaagacaata 718
||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||
Sbjct: 861 agaaaaattccaaatacagagtaactgcaatgccaagtttcagtaattattatgacaata 920
Query: 719 cttttgtctgatatattaatttaaagtgaaatgccagtagtttatttgggtttgcttac 777
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 921 cttttgtctgatatattaatttaaagtgaaatgccagtagtttatttgggtttgcttac 979
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 777
Length of database: 1179
Length adjustment: 10
Effective length of query: 767
Effective length of database: 1169
Effective search space: 896623
Effective search space used: 896623
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no304_n18.g1 MSMg01no304_n18.g1 CHROMAT_FILE:
MSMg01no304_n18.g1 PHD_FILE: MSMg01no304_n18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:44:03 2005
(762 letters)
>mm_chr7_101044814_101045975
Length = 1162
Score = 1249 bits (646), Expect = 0.0
Identities = 706/745 (94%), Gaps = 34/745 (4%)
Strand = Plus / Minus
Query: 1 tgtccaggacaaagggccacatggcatgacctggacatatcaataggtaccttgtctgac 60
||||||||||||||||||||||||||||| | ||| ||||||||||||||||||||||||
Sbjct: 739 tgtccaggacaaagggccacatggcatgaacaggagatatcaataggtaccttgtctgac 680
Query: 61 tatagtaccaacaattgaaaagagaatctcatgacccaatgatagaagaaggggaacaca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 tatagtaccaacaattgaaaagagaatctcatgacccaatgatagaagaaggggaacaca 620
Query: 121 cacacacacacacacacacacacacacacacacaca---------------------a-c 158
|||||||||||||||||||||||||||||||||||| | |
Sbjct: 619 cacacacacacacacacacacacacacacacacacacacacacacacacacacacacagc 560
Query: 159 tagagaagctggagtgtctgataaattactgagacaaatgctttacctgactgtgacttg 218
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 tagagaagctggagtgtctgataaattactgagacaaatgctttacctgactgtgacttg 500
Query: 219 acccaccgagtatgatagtatgcctggaaggcaattgacatgacaccaaagcacagaatg 278
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 acccaccgagtatgatagtatgcctggaaggcaattgacatgacaccaaagcacagaatg 440
Query: 279 tggctgtcatcctaaaatacctaagtagctaatgtgtgataacatctacatttgattttc 338
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 tggctgtcatcctaaaatacctaagtagctaatgtgtgataacatctacatttgattttc 380
Query: 339 tttcttcttcctattacacagccacagacatagacacacacagacacac----agacaca 394
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 379 tttcttcttcctattacacagccacagacatagacacacacagacacacacatagacaca 320
Query: 395 cacatagacacacag--acacacagacacacacagacacacaggcacagacacacagaca 452
| |||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 c----agacacacagacacacacagacacacacagacacacaggcacagacacacagaca 264
Query: 453 cacagacacacaacacacacacacacacagagcacagagagaggaattctcaaggagcac 512
|||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 263 cacagacacaca--acacacacacacacagagcacagatagaggaattctcaaggagcac 206
Query: 513 attgcaattaataagctaattatatataagaaacttattattccataagaaaaactaact 572
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 attgcaattaataagctaattatatataagaaacttattattccataagaaaaactaact 146
Query: 573 tgaattatccattgcatgggtaaggtgacttgactgctgacattggaactggaaataagc 632
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 145 tgaattatccattgcatgggtaaggtgacttgactgctgacattggaactggaaataagc 86
Query: 633 ttgtattgaggactcatataacaacagctctgtaggcttggttaatttagcagactanac 692
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 85 ttgtattgaggactcatataacaacagctctgtaggcttggttaatttagcagactaaac 26
Query: 693 ataagatcagctttatgcaagtatc 717
|||||||||||||||||||||||||
Sbjct: 25 ataagatcagctttatgcaagtatc 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 140
Number of extensions: 27
Number of successful extensions: 27
Number of sequences better than 10.0: 1
Number of HSP's gapped: 16
Number of HSP's successfully gapped: 1
Length of query: 762
Length of database: 1162
Length adjustment: 10
Effective length of query: 752
Effective length of database: 1152
Effective search space: 866304
Effective search space used: 866304
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
|
