BAC Information

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BAC

Clone NameMSMg01-307B08
Chromosome7 (Build37)
Map Location 4,894,055 - 4,894,700
singlet/doubletsinglet
Overlap geneA430110N23Rik
Upstream geneLOC100041186, LOC664841, Lair1, Ttyh1, Leng8, Leng9, Cdc42ep5, LOC384521, EG232801, Ncr1, Gp6, LOC100041851, Atp6v0c-ps1, Rdh13, Eps8l1, Ppp1r12c, Tnnt1, Tnni3, 6030429G01Rik, Syt5, Ptprh, LOC669557, Tmem86b, Saps1, EG628211, 1500019G21Rik, Brsk1, BC022651, Suv420h2, Cox6b2, 4930401F20Rik, Il11, 4930572D21Rik, 2210411K11Rik, Rpl28, Ube2s, D430041B17Rik, Isoc2b, Isoc2a, LOC384524, Zfp628, Nat14
Downstream geneLOC665049, Gm1079, Gm1078, Zfp579, Fiz1, Zfp524, 6430526N21Rik, 4632433K11Rik, Zfp784, Zfp580, Ccdc106, U2af2, Epn1, Rfpl4, Rasl2-9, EG665126, V1rd5, V1rd3, EG665150, Nlrp2, EG272350, V1rd4, EG665163, V1rd10, EG630071, EG665255, EG636697, EG636705, LOC636731, LOC673215, V1rd2, LOC100041627, LOC100041637, V1rd1, LOC100041647, V1rd11
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-307B08.T7 (MSMg01no307_b08.b1)MSMg01-307B08.TJ (MSMg01no307_b08.g1)
ACCAG431554AG431555
length726728
length of high quality
(start - end)
656 (71 - 726)646 (77 - 722)
definitionCHROMAT_FILE: MSMg01no307_b08.b1 PHD_FILE: MSMg01no307_b08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:48:02 2005CHROMAT_FILE: MSMg01no307_b08.g1 PHD_FILE: MSMg01no307_b08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:48:02 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAAGAGGAGGCGCG
GAATTCTCAATAGTTCCATCTCCAATGGCAGAGAGAAACACTTAACAACT
GTTTATCATCTTAGCTATCAGGGAAAAATACTAATCAAGACGACTCTGAG
ATTCCATCTTACACCTCTAAGATCAAAACCACAAGTGACAACTCACGCTG
GGGAGGCTATGGAATAAGGGAATAAGAGGAGCTACTCTTCCACTGCTGGT
GAGAAGGCAAGCCTGTACAGTCACTGTGACTCAATATGGCGGGTCCTCAG
AAAGTTGGGAATCAACTTACCTCTAGACCCACTAACATCATCTTAGGCAT
ATACCCAAAGGACACTCCATTCTACCACAGAAACACTTGCTTGCTAACTA
TGTCCATTGCAGCTTTACTCACAATATCCAGAAAGTGGAAGCAATCTAGA
TGTCTATCAACTGAAGAATGGATAAAGAAAATGGGGTATTTTACATAATC
GAGTATTTCTCAGCTGAAATAACATTTAAAATGACATAAAATTTTCAGAC
AAATGGATGCCACTAGAAAAAATCATCTTGAGTGAGCTGACCTTAACTCG
GAAAGACAAATGTGGCATGCACTCACTTATAAATGGACATTAAGCTGTTA
AGTAAATGATAATCAAGCTACACTCCACAGATCCAGAGAGGTTCGATACA
GAGGACTCTAGGGATACATGGATCAT
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCAGGCCAGCATCAGCTACATGAGT
TCAAGTTCAGTGTGAGCTACCTGAGACTGTGTCAAAAACAATATTGCTTT
GAACGGAATCAATGCACGCATTTGCTTTATGGGATAACCTCTTCAGGTTC
TGCGTTTACTAGCCAAGAGCATCCTGACTGGTGACAAGGTGACATAGGCT
GAGGGGCTGAATGACGGGTGAGCTGTGGTAATGAGCAGCAGGAAAAAGTG
GAAGGAGGACTCAACTCTCTTCCTCACACATCTGCAGATGACCAGGGAGG
TTATGAGTCTTCCTGGACGTGGGATACACCTTCAGGAAGGGGTCTGTTCA
AGGGGACCCCCACCACACCCAACCCTGGATCCACAGTTACCACTAGCACC
AGCAAGAGTCCCGGCCACCCCTTTCCAGCTCCAAGGGCCCGTGCAGGTGA
GGCATGGGCAAAGAGGCCTGGGGAGTATGTGCCCTGGGGTACAGAGATGG
GCTCCAAGCTCCTAGGGGTAACTACTTCTTACTTCAAAGATCAAGCAGAG
AGACAGCCTCGAACTCACACACTTCCTCCTGCCTCTGACTCTAAAAGGCT
GGGGTTGAAAGCATGGGCTACCACGCCTGACTAACTCACTTCTTTTCATT
CAGTTTAGAACCCCAGCCCAAGCGATAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no307_b08.g1 MSMg01no307_b08.g1 CHROMAT_FILE:
MSMg01no307_b08.g1 PHD_FILE: MSMg01no307_b08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:48:02 2005
         (646 letters)



>mm_chr7_4893855_4894900
          Length = 1046

 Score = 1210 bits (626), Expect = 0.0
 Identities = 641/646 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   caggccagcatcagctacatgagttcaagttcagtgtgagctacctgagactgtgtcaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caggccagcatcagctacatgagttcaagttcagtgtgagctacctgagactgtgtcaaa 260

                                                                       
Query: 61  aacaatattgctttgaacggaatcaatgcacgcatttgctttatgggataacctcttcag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aacaatattgctttgaacggaatcaatgcacgcatttgctttatgggataacctcttcag 320

                                                                       
Query: 121 gttctgcgtttactagccaagagcatcctgactggtgacaaggtgacataggctgagggg 180
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 321 gttctgcgtttactagccaagagcatcctgaccggtgacaaggtgacataggctgagggg 380

                                                                       
Query: 181 ctgaatgacgggtgagctgtggtaatgagcagcaggaaaaagtggaaggaggactcaact 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctgaatgacgggtgagctgtggtaatgagcagcaggaaaaagtggaaggaggactcaact 440

                                                                       
Query: 241 ctcttcctcacacatctgcagatgaccagggaggttatgagtcttcctggacgtgggata 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctcttcctcacacatctgcagatgaccagggaggttatgagtcttcctggacgtgggata 500

                                                                       
Query: 301 caccttcaggaaggggtctgttcaaggggacccccaccacacccaaccctggatccacag 360
           ||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||
Sbjct: 501 caccttcaggaaggggtctgttcaaggggacccccaccacaaccaagcctggatccacag 560

                                                                       
Query: 361 ttaccactagcaccagcaagagtcccggccacccctttccagctccaagggcccgtgcag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttaccactagcaccagcaagagtcccggccacccctttccagctccaagggcccgtgcag 620

                                                                       
Query: 421 gtgaggcatgggcaaagaggcctggggagtatgtgccctggggtacagagatgggctcca 480
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 621 gtgaggcatgggcaaagaggcctggggagtatgtgtcctggggtacagagatgggctcca 680

                                                                       
Query: 481 agctcctaggggtaactacttcttacttcaaagatcaagcagagagacagcctcgaactc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 agctcctaggggtaactacttcttacttcaaagatcaagcagagagacagcctcgaactc 740

                                                                       
Query: 541 acacacttcctcctgcctctgactctaaaaggctggggttgaaagcatgggctaccacgc 600
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 741 acacacttcctcctgcctctgactctaaaaggctggggttgaaagcatgggccaccacgc 800

                                                         
Query: 601 ctgactaactcacttcttttcattcagtttagaaccccagcccaag 646
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 ctgactaactcacttcttttcattcagtttagaaccccagcccaag 846


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 646
Length of database: 1046
Length adjustment: 10
Effective length of query: 636
Effective length of database: 1036
Effective search space:   658896
Effective search space used:   658896
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)