Query= MSMg01no307_d04.b1 MSMg01no307_d04.b1 CHROMAT_FILE:
MSMg01no307_d04.b1 PHD_FILE: MSMg01no307_d04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:48:11 2005
(685 letters)
>mm_chr7_143078617_143079699
Length = 1083
Score = 1122 bits (580), Expect = 0.0
Identities = 636/664 (95%), Gaps = 16/664 (2%)
Strand = Plus / Minus
Query: 22 atgtgggtacagatatggcccctacattaggagcactacccctgacacatagatttctat 81
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1075 atgtgggtacagatatggcccctacattaggagcactacccctgacacatagatttctat 1016
Query: 82 aaagctgctatacagctgcagaagggtcttcaaaaatagttacccaacaaagaccacact 141
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1015 aaagctgctatacagctgcagaagggtcttcaaaaatagttacccaacaaagaccacact 956
Query: 142 ctccccacccaccctgtgagtgtgtatgtgtatgcacatgtgtgcacacatgtacacaca 201
||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 955 ctcccaacccaccctgtgagtgtgtatgtgtatgcacacgtgtgcacacatgtacacaca 896
Query: 202 cacacacacacacacacacacattttcacacacatgaactgggcagaagaaaaaaaagaa 261
|||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 895 cacacacacaca--------------cacacacatgaactgggcagaagaaaaaaaagaa 850
Query: 262 agaaccccaagtccagagctggccttcccagaagcctctgagttgaaggctgtgcacctg 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 849 agaaccccaagtccagagctggccttcccagaagcctctgagttgaaggctgtgcacctg 790
Query: 322 aaaaagtatggtttggccacgtttagtgacactgagtagggtggcagaaaaagcacgagg 381
||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 789 aaaaagtatggcttggccacgtttagtgacactgagtagggtggcagaaaaagcaggagg 730
Query: 382 tttgaaatcagtaagttagctaattgacaacccaatcattcatgtcctcagctttctttt 441
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 729 tttgaaatcagtaagttagctaattgacaacccaatcattcatgtcctcggctttctttt 670
Query: 442 ctgtaaataacatgtggagattagaggaacccttaagaaaaaggaaggaaaaaagaatag 501
||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 669 ctgtaaatagcatgtggagactagaggaacccttaagaaaaaggaaggaaaaaagaatat 610
Query: 502 ctcaatataattagagtccagaagtgtttgctccggcatttctgggaccgggtctggagg 561
||| ||| |||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 609 ctc--tatggttagagtccagaagtgtttgcttcggcatttctgggaccgggtctggagg 552
Query: 562 gtgtcaagtttaatgaagtctgggatcaactttctcaggtcaaagatcaagaattgcagt 621
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 gtgtcaagtttaatgaaggctgggatcaactttctcaggtcaaagatcaagaattgcagt 492
Query: 622 agctttttgtaccagggaagcatcaaagataggggctgtggtggccaccatgaaggagga 681
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 agctttttgtaccagggaagcatcaaagataggggctgtggtggccaccatgaaggagga 432
Query: 682 ggaa 685
||||
Sbjct: 431 ggaa 428
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 39
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 685
Length of database: 1083
Length adjustment: 10
Effective length of query: 675
Effective length of database: 1073
Effective search space: 724275
Effective search space used: 724275
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no307_d04.g1 MSMg01no307_d04.g1 CHROMAT_FILE:
MSMg01no307_d04.g1 PHD_FILE: MSMg01no307_d04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:48:11 2005
(656 letters)
>mm_chr7_142947478_142948534
Length = 1057
Score = 1151 bits (595), Expect = 0.0
Identities = 642/659 (97%), Gaps = 5/659 (0%)
Strand = Plus / Plus
Query: 1 atattggttactaaaagactttaaagaactcttgtatcctcttagctttaattgccaact 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atattggttactaaaagactttaaagaactcttgtatcctcttagctttaattgccaact 260
Query: 61 tgacatagtcacctgagaaggaaatctcaattgagggatgtcccagatcagattggcctg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgacatagtcacctgagaaggaaatctcaattgagggatgtcccagatcagattggcctg 320
Query: 121 tgggtatttctacagggtattatcttgatagttgctatagaaggctcaacgccactgttg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgggtatttctacagggtattatcttgatagttgctatagaaggctcaacgccactgttg 380
Query: 181 gcagcaccattccttaggcaagtgttcctgaatcatgtaagaaagctaactaggcatggt 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 381 gcagcaccattccttaggcaagtgttcctgaatcatgtaagaaagctaactaggcatgat 440
Query: 241 cctgtgagcaaggcagcaagcagtgttccatggtttctgcttaaagctactacttgagat 300
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cctgggagcaaggcagcaagcagtgttccatggtttctgcttaaagctactacttgagat 500
Query: 301 cttccagacttccctccatgatgggctgacctgtaaactaaacataccctttcctcccct 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cttccagacttccctccatgatgggctgacctgtaaactaaacataccctttcctcccct 560
Query: 361 atgttgctattgttcagagtcttatcaaggcaacagaggggaagctggactatcttgtta 420
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 atgttgcttttgttcagagtcttatcaaggcaacagaggggaagctggactatcttgtta 620
Query: 421 acctttaggtatgataaaaagcctaaagattttttcccaagataaatcctaactatctat 480
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 621 acctttaggtatgataaaaagcctaaagattttt-cccaagataaatcctaactatctat 679
Query: 481 acctggaacagaaggaccccaggatgagctgcaatgtggattcttcatgtgggaggcagg 540
||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 680 acctggaacagaaggtccccaggatgagctgcaatgtggattcttcatgtgggaagcagg 739
Query: 541 aag---tgggcggggttccttcccaaatggattttacactgaagctaggtcaggggtctg 597
| |||| | ||||| ||||||||||||||||||||||||| |||| ||||||||||
Sbjct: 740 ctgcggtgggtgaggttc-ttcccaaatggattttacactgaagttaggacaggggtctg 798
Query: 598 ggggttcctgccactgcccacttcactgttctgtgtacagacatagtccacaatagcaa 656
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 799 ggggttcctgccactgcccacttcactgttttgtgtacagacatagtccacaatagcaa 857
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 656
Length of database: 1057
Length adjustment: 10
Effective length of query: 646
Effective length of database: 1047
Effective search space: 676362
Effective search space used: 676362
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
