BAC Information

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BAC

Clone NameMSMg01-308G01
Chromosome7 (Build37)
Map Location 13,325,656 - 13,325,994
singlet/doubletsinglet
Overlap genenone
Upstream geneV1rg2, EG628898, V1rg5, V1rg6, LOC665999, V1rg4, LOC100042423, LOC628946, LOC100043075, LOC100042433, V1rg7, LOC100042437, V1rg3, LOC100042446, LOC100043092, V1rg9, V1rg12, V1rg8, V1rg11, Zfp551, EG666065, Zfp606, 2900092C05Rik, EG637908, EG666085, Vmn2r55, LOC629079
Downstream geneLOC629081, EG232875, LOC100043128, LOC100042515, Zfp329, Zfp110, Zfp128, Zscan22, Rps5, 2310014L17Rik, 1810019N24Rik, Zfp324, Zfp446, Slc27a5, ZBTB45, LOC100042553, Trim28, Chmp2a, Ube2m, Mzf1, V1rj3, LOC100043156, V1rk1, LOC666177, EG232887, V1rj2, 6330408A02Rik, Lig1, Pla2g4c, LOC666225, Cabp5, LOC666232, Gm767, LOC666243, 9230107M04Rik, EG666256, LOC666267, LOC100042624, LOC100043194
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-308G01.T7 (MSMg01no308_g01.b1)MSMg01-308G01.TJ (MSMg01no308_g01.g1)
ACCAG432476AG432477
length812717
length of high quality
(start - end)
321 (126 - 446)339 (57 - 395)
definitionCHROMAT_FILE: MSMg01no308_g01.b1 PHD_FILE: MSMg01no308_g01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:49:41 2005CHROMAT_FILE: MSMg01no308_g01.g1 PHD_FILE: MSMg01no308_g01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:49:41 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATAAATTTTTTCCACTCATAAAATTCCCAACTANNTCTTCTCTCTCCTTT
NTCTATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAAGAGGATC
CGCGGAATTCATGAAATTCTCCCGCAAATGGATGGAACTAGAAAATATCA
TCCTGAGTGAGGTAACCCAATCACAAAAGAACACACATGGTATGCACTCA
CTGATAAGTGGATATTAGCCCAAAAGTTCCAAATACCCAAGATACAACTC
ACAGACCACATGAATCTCAAGAAGGAATACCAAAGTGTCAGTGCTTCGGT
CCTTCTTAGAAGGGGAACAAAGTACTCTCAGGAGCAAATATGGAGATAAA
GTATAGAGCAAAGACTAAAGGAAAGACCATCCAGAGACTGTCCCACCTGG
GGATTCATCCCATATACAGTTACAAAACCCAGGTACTATTGTGCATGCCA
AGAAGTGCATGCTGAAAGGAGCCCCGCCCCCGCCTGTCTCTTGAGATGCC
CTGTCTGAGCCTTACTAATACCGAGGCAGATCGCTCATAGCCAACCATTG
GACTGAGCATTGGTTTCCCACTAGAGGAGTTAGATAAAGGACTGATATAC
CTGATGGCTTTTGCTACCCTTATGAAGAACTATTTTATTAACCTACCAGA
CCCCCCCCCCTATGTCCTCATGTACTAATCCTCATACTTATGGATTATAC
TTGGCTTCCAGCTGCATATGTAATTAAATGACGTTCTTTCCCACCGCCTC
TTCTCTTAATTATTATACCCCTTCCGCCCCTCTGCATGTTTACCATAACA
TTGCCCTACCTC
TGGCGGCCGCCTGGTTCAAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXTTTCCTTCCCTCCCATAGGACGTTTGGCAGTATCTGTGGATGCT
TTCCCATGAAGTAAGGGGTATTACTCATCATCTACCTAGTGCAAAAGTGT
TCATCTCACGGTGTACAGAAAGCAGAAAGAGAAATAAAGAGAGGGTAAGG
TTTCATGGACAAGATACACGTTTCAAACCCTAGCTCCTAATAGTCCATTG
AACTATGCTGTTACTGTGGATTTAATGATGAAGTTAGTGCCCTTATCATT
TCTTCTTATCTTTATAATACCACAAACGGAAGACCAAGCCTTTAGCACTT
GAGATAACAATATCATAACATTCTATGCTTGGTCTCCAAGTGTTCTTACC
CCCCCCCAAGCAAGGCACATTTAACTCATCTCCGAGAGTCCTAATGTCTC
AATAATTCCAGTATTTCTCAAAACCTCTTGTCTAGCATATCCTCTGAGTC
TTCATGTACATTTTTAGCTGCGAGCTCCCTAGAAATCAAAGTAAAAGTTT
CATATCCTACCTTTTACGTAACACACAACTAATATTCCTATTTTCAAAGA
TGACTTGAATTTCCGTAGGAAAGATGCGCTCCATGCTTATTTTCTTTTTC
GGTCCCACATACCAGTGCTATGCCCATGATTTTTATTTCAACTTGCCCCA
AGTTATTTCTAAGCTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no308_g01.g1 MSMg01no308_g01.g1 CHROMAT_FILE:
MSMg01no308_g01.g1 PHD_FILE: MSMg01no308_g01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:49:41 2005
         (339 letters)



>mm_chr7_13325456_13326194
          Length = 739

 Score =  601 bits (311), Expect = e-176
 Identities = 332/339 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttccttccctcccataggacgtttggcagtatctgtggatgctttcccatgaagtaagg 60
           |||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||
Sbjct: 539 tttccttccctcccataggacgtttggcagtatctgtggatgctttcagatgaagtaagg 480

                                                                       
Query: 61  ggtattactcatcatctacctagtgcaaaagtgttcatctcacggtgtacagaaagcaga 120
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 479 ggtattactcatcatctacctagtgcaaaagtgttcatctcatggtgtacagaaagcaga 420

                                                                       
Query: 121 aagagaaataaagagagggtaaggtttcatggacaagatacacgtttcaaaccctagctc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 419 aagagaaataaagagagggtaaggtttcatggacaagatacacgtttcaaaccctagctc 360

                                                                       
Query: 181 ctaatagtccattgaactatgctgttactgtggatttaatgatgaagttagtgcccttat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 ctaatagtccattgaactatgctgttactgtggatttaatgatgaagttagtgcccttat 300

                                                                       
Query: 241 catttcttcttatctttataataccacaaacggaagaccaagcctttagcacttgagata 300
           |||||| ||  |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299 catttcatcacatctttataataccacaaacggaagaccaagcctttagcacttgagata 240

                                                  
Query: 301 acaatatcataacattctatgcttggtctccaagtgttc 339
           |||||||||||||||||||||||||| ||||||||||||
Sbjct: 239 acaatatcataacattctatgcttggcctccaagtgttc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 339
Length of database: 739
Length adjustment: 9
Effective length of query: 330
Effective length of database: 730
Effective search space:   240900
Effective search space used:   240900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)