BAC Information

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BAC

Clone NameMSMg01-308G07
Chromosome7 (Build37)
Map Location 122,695,522 - 122,695,771
singlet/doubletsinglet
Overlap geneSox6
Upstream geneCyp2r1, Calca, LOC100043295, Calcb, Insc, EG627967, LOC668472
Downstream geneLOC100042779, 1110006G14Rik, EG668479, LOC100043313, 1110004F10Rik, Plekha7, Rps13, Pik3c2a, LOC100042798, Nucb2, LOC100043320
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-308G07.T7 (MSMg01no308_g07.b1)MSMg01-308G07.TJ (MSMg01no308_g07.g1)
ACCAG432488AG432489
length806692
length of high quality
(start - end)
250 (130 - 379)297 (50 - 346)
definitionCHROMAT_FILE: MSMg01no308_g07.b1 PHD_FILE: MSMg01no308_g07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:49:42 2005CHROMAT_FILE: MSMg01no308_g07.g1 PHD_FILE: MSMg01no308_g07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:49:42 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AATTTTTTTTTTTCTCTATTGCCCTGACTTACTGCCCTTNCACCCCAAAA
ACCCCCTNNCCTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXCGCGGAATTCTAGGATTCCTTTTTAACTTAGAATTCTGTATCA
AGGGAATATAATAACAGTTTCCTGAATTATTACCTCCTAAAAACTAGCCT
CATAGGCACTTTGTCAAGTATTTCCTTGAAGGTATTTACTACCTAAAATA
AGACAGTTAACTAACAGACAGGAAGCTGTGACAGACAGAAAACAGAATCC
AATATGGGAGACACAAAGGTGATTCTATGTAGCACAGCAGCCTAATGAAT
AAACTAGTTCAGACTGGAGCAAGGGTGTGGAGAATCCTGAGTACGGTATC
TCTAAGGGATTTCAAGATTAGTTGTATAGTCAACTGCATTGTGTTGAGTT
TTCTTGGTCTTTTGGAGAGTCTGGTACCCCCCCCCCGCTAGTTACAGAAA
CCATTAGGAGACTAATGAACAATATAATGATAAATAATACTAATACTATT
ATCTAACACAATAAAAAGCTATAGAGAAAAGCTGCTGCTGCATCTAACTC
ATGTACATGGTTATGCTGAGCCAGGTAGTTCACAAGTCCCAGGTGTGTCC
TGCTTTCAGAGGCGTTCCAAGCTTAGTCTGGATATACTTTGTTGATAAGC
CTTTTTTACTAATAAAATTAATGATAGTCTCGCGCGTTGTCTTCTTCTAT
TGTTTATTTTCACCCACGCTACGCTTTGAAATTAACCTCCATTTTCCAAC
TCTCTT
GGCGGCCGCCTGTTTCTAAAATTTAGGTGACCTATAGAATTACCAGCGAA
ATTCCTGACAGAAGCAGTTTAGGGAAAAACACATTTGTTTTCCTCACAGT
TCACGGGGATATCATAGAGAAAGCATGGAGGTAGGTGTGAGGTGACTAGT
CACACTGCACCATCAGGCAAAAAGCAGAGAAACTCTGGGACTTTCCTCAG
TCAAGAATAGCATCAGTGATACTTAAGGTGGGGCTCCCAAATCTCTCTGA
AAACAGCACCCCAGATATACCCAGAGAAGTATCTCCTAGATAATTCTGAA
TCCTTGTCAAGGTGACAGTGATGGTGTTCCTTCACAACTATTTAAGAAAT
CTACTGCTATGTTGGACAAACCATGTGTTAGTTTATCCAACCAACACACC
CCCCCAAGAGTTCTCTGTGGCAAGATGCTGTGCTGGACATTAGAGACACA
GTGATGAATCAAACTTTAAGCTCTCTCTCTCATGAAACTCACAGTCCCCG
ATCAGTCCATTATAATAACTATAATCATGACATAACGTAAATATGCCTGT
TAGTATAGGGCCCACGCTTATATACTTAATGTCTGAGTTCATCAGAACTA
AAAATTTCACTGATATAATCCTTCTATTCCCCCCTCTTTCATATGAACAT
ATTTAATACTCATTCTCCCTACGTTACAGGCCTTAATATCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no308_g07.b1 MSMg01no308_g07.b1 CHROMAT_FILE:
MSMg01no308_g07.b1 PHD_FILE: MSMg01no308_g07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:49:42 2005
         (250 letters)



>mm_chr7_122695322_122695971
          Length = 650

 Score =  437 bits (226), Expect = e-127
 Identities = 244/250 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttaacttagaattctgtatcaagggaatataataacagtttcctgaattattacctccta 60
           ||||||||||||||||||||||| |||||||||||||||||||||||||||||  |||||
Sbjct: 450 ttaacttagaattctgtatcaagagaatataataacagtttcctgaattattagttccta 391

                                                                       
Query: 61  aaaactagcctcataggcactttgtcaagtatttccttgaaggtatttactacctaaaat 120
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 390 aaaactagcctcataggcactttctcaagtatttccttgaaggtatttactacctaaaat 331

                                                                       
Query: 121 aagacagttaactaacagacaggaagctgtgacagacagaaaacagaatccaatatggga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 aagacagttaactaacagacaggaagctgtgacagacagaaaacagaatccaatatggga 271

                                                                       
Query: 181 gacacaaaggtgattctatgtagcacagcagcctaatgaataaactagttcagactggag 240
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 270 gacacaaaggggattctatgtagcacagcagcctaatgaataaactagttcagacgggag 211

                     
Query: 241 caagggtgtg 250
           ||||||||||
Sbjct: 210 caagggtgtg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 250
Length of database: 650
Length adjustment: 9
Effective length of query: 241
Effective length of database: 641
Effective search space:   154481
Effective search space used:   154481
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)