BAC Information

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BAC

Clone NameMSMg01-311O01
Chromosome7 (Build37)
Map Location 72,207,066 - 72,207,378
singlet/doubletsinglet
Overlap genenone
Upstream geneTrpm1, BB128963, Mtmr15, LOC100041582, Mphosph10, Mcee, Apba2, 5730507A09Rik, Ndnl2
Downstream geneTjp1, Gm1693, EG665234, Tarsl2, Tm2d3, LOC665241, Pcsk6, Snrpa1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-311O01.T7 (MSMg01no311_o01.b1)MSMg01-311O01.TJ (MSMg01no311_o01.g1)
ACCAG434251AG434252
length729740
length of high quality
(start - end)
317 (45 - 361)289 (76 - 364)
definitionCHROMAT_FILE: MSMg01no311_o01.b1 PHD_FILE: MSMg01no311_o01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:52:50 2005CHROMAT_FILE: MSMg01no311_o01.g1 PHD_FILE: MSMg01no311_o01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:52:50 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTCCCTAGTGTTTGGACTTCTGAAAAGGTGACATGGTTGCCTGCAGT
ATCAGCCATGGTACAGGTAGGTGGCTGGAGGTGAGGTAGACAGAACTGAC
TACCCAGGGGGAGGGTGGGAGAGATGGCTGCCCAGGGTGAGGATGGGATA
GATGCATTGGCAGCTGGGACAAAGCTGGCACAGGAGTTAGTAGCAAGGCC
CTGGGGACTAACTAATGACCAGCTGACATGTGTCCTGTGTCCCCTGGGAC
AGGGCACAGCAGGCCCCGGATCTTTTGAATTCACTACCCAGTCTCTTCAT
GTCCTGCACCTTTTTTTTGACACCGCACTGGCAGCACACTGGGGGCGCAC
TGGGGTGCTTCTTCACCCACCCAGAGACCTCTGCCTTGTTCTTCCAATGG
CCGTGTGTATGCTGTGATTTTCTCTGCCGTGATAGAGAGCTTTTATTTAA
CTCTGTACCAACCCCTTGATCTTGTCAGAGACTTTATAAGTGATTCAGAG
AAACCCATTCTTCCGCTTTCATAGTCTTACTGGCTCTAACATAATCTCGA
ACCTCCATCGCTTGCTGGAAGTCAGTGCTTAAGCACTTCTGACTTCTCAC
AGACATGGACTCTGGAAAAGGAGCACACAGCTTCCCGGGGTGGTGAAACA
ATGTAGCTTGTAAGAACTATATAGGTGGT
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTCAGAGGCAAAATGGTAACTTGTCT
GCCCCATCGTATCTGCTCGGTGGCCATGGTGCTCTGCTACCACTCCAGTC
TCCTCTTACCATCTGCTCACAGGCTCTCTGAGTTTCTAGCCTGTTCCTCC
AATTCTCTAGGAAGCATCTTGCCACAAAGCCTTCAGGTCTGTTCTCCCTT
CCATCTAGAGCCCTCTGAACCCAGACATCCACCAGGCTGGACATTCAAGT
TGCCTCTCAGAAAGCTTTCCTTGGTCAACCTGTGAGAGACTGAGTCTTCT
CCATCCCCCGGAAGCTCTTTATAGTCTTTCTGCCTTTAATCACTTCACAT
AATCTAATCGTCTGAACAACCCCTTGTTCCCTGAATGTATAGGTATTCCC
TCCAAACTGAAATAGTCTACCGTGAGGGAGGTTCATTGAGACTCAGGAAG
TGAATCACACTTATTCCCAAGTCTTAGGAAGTTCCTGAAATCTGCAGGAT
TAATGAGTCCTCCCAAGGCAATATAAATAGGGATAACTGTGGGTGAGAAG
AGAGTTGTTGTCCATTGTAAAGTGCGAGTGTTGATGATGAATCTGTTGAC
AGTCCCCCACCTTCTTGTAGTTAATCCCTTCTCAGGCTCCTGTAACGAAA
TCCTACCCCCCTTATTGCTTCCCTAAGTTAAAATTGGCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no311_o01.b1 MSMg01no311_o01.b1 CHROMAT_FILE:
MSMg01no311_o01.b1 PHD_FILE: MSMg01no311_o01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:52:50 2005
         (317 letters)



>mm_chr7_72206862_72207578
          Length = 717

 Score =  574 bits (297), Expect = e-168
 Identities = 309/313 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctccctagtgtttggacttctgaaaaggtgacatggttgcctgcagtatcagcca 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 gaattctccctagtgtttggacttctgaaaaggtgacatggttgcctgcagtatcagcca 458

                                                                       
Query: 65  tggtacaggtaggtggctggaggtgaggtagacagaactgactacccagggggagggtgg 124
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 tggtacagggaggtggctggaggtgaggtagacagaactgactacccagggggagggtgg 398

                                                                       
Query: 125 gagagatggctgcccagggtgaggatgggatagatgcattggcagctgggacaaagctgg 184
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 397 gagagatggctgcccagggtgaggatgggatagatgcattggcagctgggacaaagcttg 338

                                                                       
Query: 185 cacaggagttagtagcaaggccctggggactaactaatgaccagctgacatgtgtcctgt 244
           ||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct: 337 cacaggagttagtagcaaggccctggggactaaatgatgaccagctgacatgtgtcctgt 278

                                                                       
Query: 245 gtcccctgggacagggcacagcaggccccggatcttttgaattcactacccagtctcttc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 gtcccctgggacagggcacagcaggccccggatcttttgaattcactacccagtctcttc 218

                        
Query: 305 atgtcctgcacct 317
           |||||||||||||
Sbjct: 217 atgtcctgcacct 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 317
Length of database: 717
Length adjustment: 9
Effective length of query: 308
Effective length of database: 708
Effective search space:   218064
Effective search space used:   218064
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)