BAC Information

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BAC

Clone NameMSMg01-312A16
Chromosome7 (Build37)
Map Location 136,019,579 - 136,019,852
singlet/doubletsinglet
Overlap genenone
Upstream geneZfp668, Zfp646, BC039632, Vkorc1, Bckdk, Myst1, Prss8, Prss36, Fus, Pycard, Trim72, LOC436010, EG668675, Itgam, Itgax, Itgad, Cox6a2, LOC100043133, Armc5, Tgfb1i1, Slc5a2, BC017158, EG628781, Rgs10, LOC100043643, Tial1, Bag3, EG639030, Inpp5f, LOC100043651, 1110007A13Rik, Sec23ip
Downstream geneLOC210714, LOC100043144, Ppapdc1a, Brwd2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-312A16.T7 (MSMg01no312_a16.b1)MSMg01-312A16.TJ (MSMg01no312_a16.g1)
ACCAG434372AG434373
length760729
length of high quality
(start - end)
333 (66 - 398)280 (76 - 355)
definitionCHROMAT_FILE: MSMg01no312_a16.b1 PHD_FILE: MSMg01no312_a16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:53:02 2005CHROMAT_FILE: MSMg01no312_a16.g1 PHD_FILE: MSMg01no312_a16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:53:02 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAAGAGGATCCGCGGA
ATTCTGGGTTTACAGGAAGCTGGGAGATTTGCTGGGAAGATGTGATGAGC
CAGACACATGGTCCTGAGGACAGATAACCAGCCATGTGGCAGAATGTAGG
GTAGAATAAATGGGACTTTTTAAGTTACATCTAGTCGGAGAAGAACCTAG
CTATATGGCAAAGGTGTTTGTAAGTATAGTTTGAGTCTGAGTCTTATTTC
TGGGGGCATGGGGCTGAAAGGAAGAACCAGGGCCTAACTTCAACAGAGAC
GTGTAATTTTTGTTTTTTTGTTTTGTTTTGTTTTGTTTTCTGGGCCTTAA
GAACCTCCCTCCAGGGGCTGGGGGAAGGGGTTAGGGGAATGTTTCAGTTC
CATATATTTCTCCCCCCCTCATAGTTATTTATATTTTTGATTTAACCCCT
CTCTAGTGCTATTTGTAACCTCCAAGGATTGTCTGCTAATGATTATCATC
ACCCCTTTCTATTATTAATCAGAGCTTGCTTTTGCTTTATCCCGGCGTTA
CACGCTCTCAGAACATATCCTCCATTCTGCGATGATTCGGTTGCCTTTTT
GATCCCCCTCCCAGTTTGTTATTGCTCCTTCTTTCAGACCCCCGGATTCT
TATGTCTTTTTTCCCTAACCCCCTTTTGCTCTCTTATTGGTGTTCATGTT
TCATAGAGATTTTTCGATTCCCTCGTCTTTTTGTTCCCCTCCTTTTTTTT
CTCCCTTTTT
GATTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTCCCTCAATCCCTCCTGGGCTGAGA
TGGCTAACTAGAGATGGCCACTCTCCTCTTCACTGTTGTAACATATCCCA
GACTAGGATCATCCCTCATCCTGGAGATGGGCTCTTATGGCATCAATGCA
ATAGAAATGAGACCAAACCAAGTACTATGGACAAGTCAGGACAGACCCCT
TTCTTGGGACATTTGCTCCTAAGGATGATGATCAGCTCAGAGATGACCTT
TTTTTTTTTTTTAAATATTTTTTTACACTCCATATTCCATTCCCTGCTCC
CTCTTCCACTCNCTGACTGATACAATACCACACTTCATTCCCTTCCCAAG
AGATGACCTTTTCCACAAAAGAACCTAAATCTACCGGGTGTGGGTAGGTT
ACGTTAGCCACAGGCACAGTTTCAAAGATGTTTTTTCTTCTTGGGTATAA
ACATCCTGGTCTTGTTTGAGCAGCCAATGGAACCTGGGGACCACTGAGGT
CATCTTATAGTTGGCATCATTATGTAAATGTTCTGATATATTGGCTTGGC
CTGGACCTGTGATAAGGCTGACAAAATTGTACCTACTCGAGCTGTTGATA
AAGTGTAAGGATGGCGTAAGAAAATAATAGTTAGTTCCAATAGGTCTGAG
GCCTTATTACTTCTGCATGACACTCATGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no312_a16.g1 MSMg01no312_a16.g1 CHROMAT_FILE:
MSMg01no312_a16.g1 PHD_FILE: MSMg01no312_a16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:53:02 2005
         (280 letters)



>mm_chr7_136019379_136020058
          Length = 680

 Score =  507 bits (262), Expect = e-148
 Identities = 273/278 (98%), Gaps = 4/278 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   tccctcaatccctcctgggctgagatggctaactagagatggccactctcctcttcactg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tccctcaatccctcctgggctgagatggctaactagagatggccactctcctcttcactg 260

                                                                       
Query: 61  ttgtaacatatcccagactaggatcatccctcatcctggagatgggctcttatggcatca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttgtaacatatcccagactaggatcatccctcatcctggagatgggctcttatggcatca 320

                                                                       
Query: 121 atgcaatagaaatgagaccaaaccaagtactatggacaagtcaggacagacccctttctt 180
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 321 atgcaatagaaatgagaccaaaccaagtactatggacaggtcaggacagacccctttctt 380

                                                                       
Query: 181 gggacatttgctcctaaggatgatgatcagctcagagatgaccttttttttttttttaaa 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||
Sbjct: 381 gggacatttgctcctaaggatgatgatcagctcagagatgacctttttttttttt---aa 437

                                                 
Query: 241 tatttttttacactccatattccattccctgctccctc 278
           |||||||| |||||||||||||||||||||||||||||
Sbjct: 438 tatttttt-acactccatattccattccctgctccctc 474


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 280
Length of database: 680
Length adjustment: 9
Effective length of query: 271
Effective length of database: 671
Effective search space:   181841
Effective search space used:   181841
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)