Query= MSMg01no312_a20.b1 MSMg01no312_a20.b1 CHROMAT_FILE:
MSMg01no312_a20.b1 PHD_FILE: MSMg01no312_a20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:53:03 2005
(368 letters)
>mm_chr7_120961879_120962649
Length = 771
Score = 685 bits (354), Expect = 0.0
Identities = 362/366 (98%), Gaps = 3/366 (0%)
Strand = Plus / Plus
Query: 5 gaattccagatcctgcctccatgcacagagagttagtagagctggggatgtggtagcaaa 64
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccagatcctgtctccatgcacagagagttagtagagctggggatgtggtagcaaa 264
Query: 65 gtcattgatttggagccaaacttcttgctgggagttcactataagtttggagaattctga 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gtcattgatttggagccaaacttcttgctgggagttcactataagtttggagaattctga 324
Query: 125 tcatttccttttgtgagatggagaggggcttcccttccagggtggctccagactttaaag 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tcatttccttttgtgagatggagaggggcttcccttccagggtggctccagactttaaag 384
Query: 185 ---aagatgggatgaatgcatataaatagactggaaacagagggccttcagcaaatgcca 241
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gagaagatgggatgaatgcatataaatagactggaaacagagggccttcagcaaatgcca 444
Query: 242 ttttcacccctaacgttttctctgctgaaggaagtttgacctttgcaaactcacttatgc 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ttttcacccctaacgttttctctgctgaaggaagtttgacctttgcaaactcacttatgc 504
Query: 302 acaagagacactcatttgaccacccttggaaatgttcacaggatatacaaaggtgtgtga 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 acaagagacactcatttgaccacccttggaaatgttcacaggatatacaaaggtgtgtga 564
Query: 362 acatta 367
||||||
Sbjct: 565 acatta 570
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 368
Length of database: 771
Length adjustment: 9
Effective length of query: 359
Effective length of database: 762
Effective search space: 273558
Effective search space used: 273558
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no312_a20.g1 MSMg01no312_a20.g1 CHROMAT_FILE:
MSMg01no312_a20.g1 PHD_FILE: MSMg01no312_a20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:53:03 2005
(287 letters)
>mm_chr7_121034225_121034905
Length = 681
Score = 487 bits (252), Expect = e-142
Identities = 275/286 (96%), Gaps = 6/286 (2%)
Strand = Plus / Minus
Query: 1 cagtttccagatgtctagcggagattttgatagtaccagaggaggaatgcctgaagctat 60
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 cagtttccagatgtctagcagagattttgatagtaccagaggaggaatgcctgaagctat 421
Query: 61 ttggtccattctccactggcctctgtctctgtttcaccatatctagcccttcccaagaga 120
|||||||||||||||||||| ||||||||||||||||||| ||||||||||||||
Sbjct: 420 ttggtccattctccactggc------ctctgtttcaccatatctaacccttcccaagaga 367
Query: 121 gaggaatacagacttctcctaaggagagagccccagaagcagcattgggaacaaagcact 180
||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 gaggaatgcagacttctcccaaggagagagccccagaagcagcattgggaacaaagcact 307
Query: 181 ttgtacaatggttgaaaagagacacctgcagacacagtttatgatatctgaagatgcagg 240
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 306 ttgtacaatggttgaaaagagacacctgcagacacagtttatgatgtctgaagatgcagg 247
Query: 241 gtggctgactgactgtgcgtggcgactgactgggcatggtactatt 286
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 gtggctgactgactgtgcgtggcgactgactgggcatggtactatt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 681
Length adjustment: 9
Effective length of query: 278
Effective length of database: 672
Effective search space: 186816
Effective search space used: 186816
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
