BAC Information

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BAC

Clone NameMSMg01-312B07
Chromosome7 (Build37)
Map Location 122,088,344 - 122,088,561
singlet/doubletsinglet
Overlap genenone
Upstream geneSpon1, Rras2, LOC668451, Copb1, Psma1, 4933406I18Rik, Pde3b, Cyp2r1, Calca, LOC100043295, Calcb, Insc, EG627967
Downstream geneLOC668472, Sox6, LOC100042779
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-312B07.T7 (MSMg01no312_b07.b1)MSMg01-312B07.TJ (MSMg01no312_b07.g1)
ACCAG434397AG434398
length731724
length of high quality
(start - end)
221 (42 - 262)43 (71 - 113)
definitionCHROMAT_FILE: MSMg01no312_b07.b1 PHD_FILE: MSMg01no312_b07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:53:05 2005CHROMAT_FILE: MSMg01no312_b07.g1 PHD_FILE: MSMg01no312_b07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:53:05 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CTTCCTCTTTCTCTAAGGCTTTTCCCATTCCATCACGTGGCTGCTTGTCT
GCCATGCGTCTACCCTGAAGGCCAGCAGAAGAGGCATGACTCCTCTACTT
CATCTTTCTCCTTCAGGCAGCTTCTGAGATTATCAGCCTGCCTGCTCTGG
GAGAATTTTTCTTTTAAAAAGAATAAAATTTTTCTCAAGCTTCTTAAATT
CCTTTATTAATGAGGGTTAAGAACTCCAAGTTGGGATTCCAATTTCTCTG
ACATAATCTGATGTCCCAGATGTGACTTCCTAAAATTCCTATTACACATT
CGGACTTATATACTAATTGACCCCCCACTCCCCCCTTTAATAGTGTTAGG
CTCATTCTGCATCCACCCCCCCCTAAAAAAAAAACATGATTAAGCGAGGG
ATTGAAGTGAACAGTACCATGAAGCTTGGCATTGACTTTATGTTGACCAG
CATTTCCTGCCTCTATAGCTCTATTACTATTTGTCTAATTATCACATTAA
TTTATATGGCTAAAGCCCCCTGTATTTCCTGTCTTAAACGTGCGAGGAGA
TACTGTTATGTATTCTAACACTTTATTGACTATGACCTGGGCGTCTGGAA
TGTCTTTTGTTCTTCACCTGTTGCTGTTTACCCTGTTTAGATTCCTCATT
GCCTTGGCATTCCTTTAACTTTTTGCAATAG
TACTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTTTGTTTGAGAGACTTTTCTCAGATGTATA
TAAATATGATTTTTTTCTCCTTTGGAAAAAGTGTTAGAATTAGTAGGAAG
TATTGTATAATTTTGTGGAAAGGAAANAATGGATTATTAAGGTGTTTTTG
AAGGTTTAATAAANGAAGAAGGATATATTGTGGTNATAATTATTAATCTA
CCCTCTCTCCTCTGACCACTTCCGGCAACCCTCTACCTTCCTCTCATCAA
GTACCCATCCCACTCTCTTGTCTTTTTGATTCTGTTGGTGACGGAGAAAA
AATTTTAAATGNGTTCCCAGAGCAAANCCCCTTTGATTTATATGGGTTTG
GATGTGTTTTCCCCCCCAAAAATCATTTAAAACACCGGGGGGGTTACTAT
ATATCACTTGTGTATCCCCTACTCTGTTTTAGTATTCCTAGACTTTATTT
CTCTCCCCCTCACTGCACAGGCTACTTCCTTCTTCCCATCTGATCTTATG
TGTTTTATCTCCTCCCCCATGATTTCAATTTTTTTTGTTGTTTTTTCAAA
ATGTTTCTACCTTTCACTGCCATTTAAGCCTTTGTTTCTTTTCTCTTTTC
TCCTTTTGACTCTTTCGTTTTTCCCTCCTCTTTTTCTTCTTTAATATAAT
TCTTTTCCAATTGCCCTTGATCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no312_b07.b1 MSMg01no312_b07.b1 CHROMAT_FILE:
MSMg01no312_b07.b1 PHD_FILE: MSMg01no312_b07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:53:05 2005
         (221 letters)



>mm_chr7_122088141_122088761
          Length = 621

 Score =  398 bits (206), Expect = e-115
 Identities = 215/218 (98%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcttcctctttctctaaggcttttcccattccatcacgtggctgcttgtctgcca 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcttcctctttctctaaggcttttcccattccatcacgtggctgcttgtctgcca 263

                                                                       
Query: 64  tgcgtctaccctgaaggccagcagaagaggcatgactcctctacttcatctttctccttc 123
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tgcgtctaccctgaaggtcagcagaagaggcatgactcctctacttcatctttctccttc 323

                                                                       
Query: 124 aggcagcttctgagattatcagcctgcctgctctgggagaatttttcttttaaaaagaat 183
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 aggcagcttctgagattagcagcctgcctgctctgggagaatttttcttttaaaaagaat 383

                                                 
Query: 184 aaaatttttctcaagcttcttaaattcctttattaatg 221
           |||| |||||||||||||||||||||||||||||||||
Sbjct: 384 aaaaattttctcaagcttcttaaattcctttattaatg 421


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 221
Length of database: 621
Length adjustment: 9
Effective length of query: 212
Effective length of database: 612
Effective search space:   129744
Effective search space used:   129744
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)