Query= MSMg01no312_f02.b1 MSMg01no312_f02.b1 CHROMAT_FILE:
MSMg01no312_f02.b1 PHD_FILE: MSMg01no312_f02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:53:22 2005
(318 letters)
>mm_chr7_103677271_103677988
Length = 718
Score = 592 bits (306), Expect = e-173
Identities = 312/314 (99%)
Strand = Plus / Minus
Query: 5 gaattcaagccttgtctttcggacttgctgtagctaccattaacctcccatcaccctttc 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 518 gaattcaagccttgtctttcggacttgctgtagctaccattaacctcccatcaccctttc 459
Query: 65 ccaaggacctcatttgaactagttttgtgtatggcatgagatataccaatgtggcttttg 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 458 ccaaggacctcatttgaactagttttgtgtatggcatgagatataccaatgtggcttttg 399
Query: 125 tggttttatcctgtaggataatactatttagttgggggaaccaatccagatacatcagtc 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 tggttttatcctgtaggataatactatttagttgggggaaccaatccagatacatcagtc 339
Query: 185 actacctgagatctagcagcaggatgcttcatccagcgaaatgggagaagatctggcctg 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 actacctgagatctagcagcaggatgcttcatccagcgaaatgggagaagatctggcctg 279
Query: 245 gcttcttcaggaaaaccaaaactgtgagagctgggtgggggcagagggcatttggcagtc 304
||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 278 gcttctttaggaaaaccaaaactgtgagagctgggtgggggcagtgggcatttggcagtc 219
Query: 305 actggtgttgggga 318
||||||||||||||
Sbjct: 218 actggtgttgggga 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 318
Length of database: 718
Length adjustment: 9
Effective length of query: 309
Effective length of database: 709
Effective search space: 219081
Effective search space used: 219081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no312_f02.g1 MSMg01no312_f02.g1 CHROMAT_FILE:
MSMg01no312_f02.g1 PHD_FILE: MSMg01no312_f02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:53:22 2005
(294 letters)
>mm_chr7_103604578_103605271
Length = 694
Score = 524 bits (271), Expect = e-153
Identities = 287/293 (97%), Gaps = 2/293 (0%)
Strand = Plus / Plus
Query: 1 cagttcctttagaaggcaaagctgtgcataaatgtaaggacaggctgggggcttctcacc 60
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 201 cagttcctttagaaggcaaagctgtgcataaatgtaaggacagggtgggggcttctcacc 260
Query: 61 tactcaccagcttaccctggaaagcttaggtgcctcctagcaaaccagaaagcaccccat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tactcaccagcttaccctggaaagcttaggtgcctcctagcaaaccagaaagcaccccat 320
Query: 121 acatacacatgcataacacaaatgtaccacttgcaaacacataccactcacacacacaca 180
|||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 321 acatacacttgcataacacaaatgtaccacttgcaaacacataccacacacacacacaca 380
Query: 181 cacacacacagtcactcaccacatacacacacaatatacacaccacacacacata--tat 238
||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct: 381 cacacacacagtcactcaccacatacacacacaatatacacaccacacacacacacatat 440
Query: 239 acacaaaccacataaacacatacagaccacacacatacaacacaaacattccc 291
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 acacaaaccacataaacacatacagaccacacacatacaacacaaacattccc 493
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 48
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 294
Length of database: 694
Length adjustment: 9
Effective length of query: 285
Effective length of database: 685
Effective search space: 195225
Effective search space used: 195225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
