BAC Information

Click to search

BAC

Clone NameMSMg01-312N01
Chromosome7 (Build37)
Map Location 69,404,570 - 69,577,222
singlet/doubletdoublet
Overlap geneNdn, Magel2, Mkrn3
Upstream geneLOC100041259, EG664943, B230209E15Rik, EG620934, LOC100041293
Downstream genePeg12, Atp5l-ps1, EG665038, LOC669222, LOC384631, LOC622243, EG622251, Chrna7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-312N01.T7 (MSMg01no312_n01.b1)MSMg01-312N01.TJ (MSMg01no312_n01.g1)
ACCAG434927AG434928
length736736
length of high quality
(start - end)
249 (125 - 373)235 (128 - 362)
definitionCHROMAT_FILE: MSMg01no312_n01.b1 PHD_FILE: MSMg01no312_n01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:53:59 2005CHROMAT_FILE: MSMg01no312_n01.g1 PHD_FILE: MSMg01no312_n01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:53:59 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(69,576,974 - 69,577,222)(69,404,570 - 69,404,804)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
TATGCTCAGAAGAATGATGGCAGCCTCGTTTACATGAGCAACCCTCTGTG
TGGTGATAAGCAGTGTTACTCTAAATCCTTTTTGTAGAGTTCCAGAAACG
ACTTTATTAGTAAAGCACTTGCTTTGTAAGAATGAACGCCTGAATTTACA
TATTAAGTACCTATTTAAAAGCTGCCCATTGTACAGGCTCAAAGCCTCTC
TCTAGAGAGAGACCATATAAAGAATTTCCAATTTTGGAAAGTAATTAATT
TACATAAATCGAACATGAGGAAAACTTTATCTTTTTTTGAGATAATCTCT
CACTCTGTATATTTGTCTAGCCTGACACTTGCTATATAACATGCTGGCCT
CAAATTCACACATCCATGCCCATCTCTCCATCCCAAGTGCTGGTATTAAG
TGTGTCTGGCTGGAATAGAGAACTCAATTTTACTCTAGCACCTGACTTTG
ATCGTCAATTTTTATCACAGTGAAAATATTGGGGCGTTCGCTGAGTTTGG
TTCAATAGTCTGAAGAACTAGTAGGCTTATCATATAACCCCTATTCCAAG
AGAATTACTTATGTAGGGTGGATGACCAGTCAAGCTTTGTTTCATGCAAT
TTGTCAGGCAGCAGCTGTACACAGCTTATTTGTTGCTCCCCTTCCCTTGA
TGCTTTTGACCCACTACAGCTTTCCTTTCCTGATAG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXACACTGATTTTAGATTCATAATAATGTCAAC
TGTTATTTAAATTTTATTTACTCTTAATAGATACAGAACAGAAGTGTAAT
ATGGTCACATCTGATATTTTCCCTATATGTTTACACTATCAAAGAAAGCT
GGTTGCCATATCCATAGACACAAGGACTTGTAGGAAAACATTTTATATGT
AGTTTCTTAGTACTTTTGAGTATACATTAAAAGTATGGGACCATGCTTAC
CAATAGATTGGTAATAAATAAATAATAATCCTTATATATATTTTTCTGGA
AGACATTTTTTATTTTTTATTTTCGCCCCCCCCCACTTGTTTGCCCGTCC
CTTTTTCAGCCACTGGTAACCATCATTATACAAAAAGATTTCATGAATTT
CGGTTTTAGATGTTTCATGTATCAGAAGGTGGATTTTTCAGTACCTGCAT
TACATAAGCATTAGTGTCTTCCAGATCCTAGCACACTTTTGTTGTTGATA
GTCTGATTAGCCCACCTTGATTATAGAGACCATTATCTTCTTTGTCCTTC
ACTGACAGAACTCTCATTAGCATAATCGTCCTTTTATTGTGAGTAATGCT
GTTTTGAGTTTATGGTATATAATTTTCCTGAGAATCTGATATTCCATCAG
GATAAACTGTCCATTGTTACTGTTGAGACCACTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no312_n01.b1 MSMg01no312_n01.b1 CHROMAT_FILE:
MSMg01no312_n01.b1 PHD_FILE: MSMg01no312_n01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:53:59 2005
         (249 letters)



>mm_chr7_69576774_69577422
          Length = 649

 Score =  474 bits (245), Expect = e-138
 Identities = 248/249 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   atcctttttgtagagttccagaaacgactttattagtaaagcacttgctttgtaagaatg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 atcctttttgtagagttccagaaacgactttattagtaaagcacttgctttgtaagaatg 390

                                                                       
Query: 61  aacgcctgaatttacatattaagtacctatttaaaagctgcccattgtacaggctcaaag 120
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 aacacctgaatttacatattaagtacctatttaaaagctgcccattgtacaggctcaaag 330

                                                                       
Query: 121 cctctctctagagagagaccatataaagaatttccaattttggaaagtaattaatttaca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 cctctctctagagagagaccatataaagaatttccaattttggaaagtaattaatttaca 270

                                                                       
Query: 181 taaatcgaacatgaggaaaactttatctttttttgagataatctctcactctgtatattt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 taaatcgaacatgaggaaaactttatctttttttgagataatctctcactctgtatattt 210

                    
Query: 241 gtctagcct 249
           |||||||||
Sbjct: 209 gtctagcct 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 649
Length adjustment: 9
Effective length of query: 240
Effective length of database: 640
Effective search space:   153600
Effective search space used:   153600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no312_n01.g1 MSMg01no312_n01.g1 CHROMAT_FILE:
MSMg01no312_n01.g1 PHD_FILE: MSMg01no312_n01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:53:59 2005
         (235 letters)



>mm_chr7_69404370_69405004
          Length = 635

 Score =  447 bits (231), Expect = e-130
 Identities = 234/235 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tagatacagaacagaagtgtaatatggtcacatctgatattttccctatatgtttacact 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tagatacagaacagaagtgtaatatggtcacatctgatattttccctatatgtttacact 260

                                                                       
Query: 61  atcaaagaaagctggttgccatatccatagacacaaggacttgtaggaaaacattttata 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atcaaagaaagctggttgccatatccatagacacaaggacttgtaggaaaacattttata 320

                                                                       
Query: 121 tgtagtttcttagtacttttgagtatacattaaaagtatgggaccatgcttaccaataga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgtagtttcttagtacttttgagtatacattaaaagtatgggaccatgcttaccaataga 380

                                                                  
Query: 181 ttggtaataaataaataataatccttatatatatttttctggaagacatttttta 235
           |||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttggtaataaataaataaaaatccttatatatatttttctggaagacatttttta 435


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 235
Length of database: 635
Length adjustment: 9
Effective length of query: 226
Effective length of database: 626
Effective search space:   141476
Effective search space used:   141476
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)