Query= MSMg01no313_o24.b1 MSMg01no313_o24.b1 CHROMAT_FILE:
MSMg01no313_o24.b1 PHD_FILE: MSMg01no313_o24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:56:13 2005
(763 letters)
>mm_chr7_122977532_122978695
Length = 1164
Score = 1353 bits (700), Expect = 0.0
Identities = 746/762 (97%), Gaps = 4/762 (0%)
Strand = Plus / Plus
Query: 5 gaattc-agtagagaaagaaatcatagagatttcttacttaatctttcccagtctatgac 63
|||||| ||||||||||||||| | || ||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaagtagagaaagaaatgaaagggatttcttacttaatctttcccagtctatgac 264
Query: 64 agctataaggaatattatctccaatttgcagacaagagactgagaaggaacactgcaagc 123
||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 agctatagggaatattatatccaatttgcagacaagagactgagaaggaacactgcaagc 324
Query: 124 aaattgcaagacgatcatttatatctgggcctaaatttgctgtttttattattcagtggc 183
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aaattgcaagacgaagatttatatctgggcctaaatttgctgtttttattattcagtggc 384
Query: 184 tcagagaacaaattacttcataagctacggcctatcacagttcctttctacatcaggcac 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tcagagaacaaattacttcataagctacggcctatcacagttcctttctacatcaggcac 444
Query: 244 tgtacaaatttaccagggaaatgtgctcttggtgaggaatcactgattaacagggcaggg 303
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 445 tgtacaaatttaccagggaaatgtgctcttggtgaggaatcactgtttaacagggcaggg 504
Query: 304 gttcttctgtacactggtgtcgctgtcttacaagatctccatctgggttttgtggctatt 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gttcttctgtacactggtgtcgctgtcttacaagatctccatctgggttttgtggctatt 564
Query: 364 gctttgggtttggtattctcagtttgcaatgctagggcgtacacacaggtaagggctaca 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gctttgggtttggtattctcagtttgcaatgctagggcgtacacacaggtaagggctaca 624
Query: 424 gccacagcccagcttctttcatgtcgtttccatgcctaagatcaaatgtaacacaagtac 483
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 625 gccacagcccagcttctttcatgtcgtgtccatgcctaagatcaaatgtaacacaagtac 684
Query: 484 caagttttcaggatgagtgtgagagaatagaccatcaaaacacctgcaaccttcaccaaa 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 caagttttcaggatgagtgtgagagaatagaccatcaaaacacctgcaaccttcaccaaa 744
Query: 544 gtgcagagccttcttagaccttcttagagccctaggcaggaattaggcatgggacatata 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 gtgcagagccttcttagaccttcttagagccctaggcaggaattaggcatgggacatata 804
Query: 604 tctgtaatcccagcatttagaaggctgaggcaggaggataacagaaactcaagattactt 663
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 805 tctgtaatcccagcatttagaaggctgaggcaggagaataacagaaactcaagattactt 864
Query: 664 ccattacatagtgaaacaaataaaataaaacttcttataaggatgcccaccattcttata 723
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 865 ccattacatagtgaaacaaataaaataaaacttcttataaggatgcccaccattcttata 924
Query: 724 tatgtatatacatatattaatatata-at--atatatatata 762
|||||||||||||||||| ||||||| || ||| |||||||
Sbjct: 925 tatgtatatacatatattcatatatatatgaatacatatata 966
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 763
Length of database: 1164
Length adjustment: 10
Effective length of query: 753
Effective length of database: 1154
Effective search space: 868962
Effective search space used: 868962
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no313_o24.g1 MSMg01no313_o24.g1 CHROMAT_FILE:
MSMg01no313_o24.g1 PHD_FILE: MSMg01no313_o24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:56:13 2005
(331 letters)
>mm_chr7_123089357_123090088
Length = 732
Score = 611 bits (316), Expect = e-179
Identities = 328/332 (98%), Gaps = 1/332 (0%)
Strand = Plus / Minus
Query: 1 cagatgggacgtagagaatttcctgaagagttagaata-tttttttttttgaccaaaatg 59
||||||||||||||||||||||||| || ||||||||| |||||||||||||||||||||
Sbjct: 532 cagatgggacgtagagaatttcctgtagtgttagaatattttttttttttgaccaaaatg 473
Query: 60 tctggaatgatttgttagagttagagtttttagaaaaaccaaatacctgtatgtacatat 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 472 tctggaatgatttgttagagttagagtttttagaaaaaccaaatacctgtatgtacatat 413
Query: 120 atgaaaaaaatctctcttcctttatctctatctatatgcatgcaagctttacaaagtaca 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 412 atgaaaaaaatctctcttcctttatctctatctatatgcatgcaagctttacaaagtaca 353
Query: 180 atttcacagaaattttcacaatatgtgggctccaattaattcctgaacagctcagtgatt 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 352 atttcacagaaattttcacaatatgtgggctccaattaattcctgaacagctcagtgatt 293
Query: 240 gaaaaagttcaattcttgttcagcatgatattctctagttgcttttcttatgtcccccat 299
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 292 gaaaaagttcaattcttgttcagcatgacattctctagttgcttttcttatgtcccccat 233
Query: 300 tgttcacgttacagtgaaggaagaggatgtgt 331
||||||||||||||||||||||||||||||||
Sbjct: 232 tgttcacgttacagtgaaggaagaggatgtgt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 331
Length of database: 732
Length adjustment: 9
Effective length of query: 322
Effective length of database: 723
Effective search space: 232806
Effective search space used: 232806
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
