BAC Information

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BAC

Clone NameMSMg01-315B22
Chromosome7 (Build37)
Map Location 51,137,453 - 51,137,992
singlet/doubletsinglet
Overlap geneKlk4
Upstream geneLOC100039507, EG435975, LOC668606, EG668668, LOC100039543, LOC668612, LOC385199, LOC100039589, EG668620, Zfp715, Siglecf, Siglecg, LOC100039610, Lim2, Nkg7, Cldnd2, Etfb, 2210412E05Rik, A230106M20Rik, 4931406B18Rik, LOC668630, LOC100039946, Cd33, BC043301, Zfp719, 4933405K07Rik, Ceacam18, Siglece, Atpbd3, Klk14, Klk13, Klk12, Klk11, Klk10, Klk9, Klk8, Klk7, Klk6, Klk5
Downstream geneKlk2-ps, Klk15, Klk1b7-ps, Klk1b8, Klk1b1, Klk1b9, Klk1b10-ps, Klk1b11, LOC100039713, Klk1b26, Klk1b18-ps, Klk1b27, Klk1b14-ps, Klk1b15-ps, Klk1b21, Klk1b22, Klk1b16, Klk1b24, Klk1b3, Klk1b4, Klk1b5, Klk1, 1700028J19Rik, LOC668661, Acpt, LOC628854, EG638453, Clec11a, Shank1, 1700008O03Rik, Syt3, Lrrc4b, 0610012D14Rik, Josd2, 2310044H10Rik, 1700021P22Rik, Mybpc2, Spib, Pold1, Nr1h2, Napsa, Kcnc3, Myh14, 1700023D19Rik, Zfp473, Vrk3, EG628904, Atf5, Nup62, Il4i1, Tbc1d17, Akt1s1, Pnkp, Ptov1, Med25
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-315B22.T7 (MSMg01no315_b22.b1)MSMg01-315B22.TJ (MSMg01no315_b22.g1)
ACCAG435851AG435852
length804725
length of high quality
(start - end)		256 (46 - 301)539 (80 - 618)
definitionCHROMAT_FILE: MSMg01no315_b22.b1 PHD_FILE: MSMg01no315_b22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:56:30 2005CHROMAT_FILE: MSMg01no315_b22.g1 PHD_FILE: MSMg01no315_b22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:56:30 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXTTCANGAGGAGGGGCGNAATTCT
TTGATTTTCTCTGTACCCTATTTTTAAATAGGGTTATTTGAATTTCTGGA
GTCCAGCTTCTTGTGCTCTTTGGATATATGGNATATTANTCCCGTATCAA
ATTTAGGATTGGAAAAAATCCTTTCCCAATCTGTTGNTGGCCTTTTTGTC
TTATTGACAGTGTCTTTTGCCTTATANAANCTTTGCAATTTTATGAAGTC
CTATTTGTCAATTCTTGATTTTACAGCACANACCATTGCTGTTCTGTTTA
NAANATTTTTCCCCTGTGTCCATATCTTTGAGGCTTTCCCCCATTCTCCC
CTTATTTTTTCCCCCCTCCCCCGGTTTCTTTTCCNNNTTCTTTTGATCGG
TTTGGGGTGGCCCCCCGCCCCNNNAAAAAAGGNAATAAATTTGNCTTTGG
GGGGCCCTTAGTTTTTTTTTNCNNTNTNNCCNTNTGGGGGGGGGGGGGGG
GGGGNNNCTCTTTTNNNNNTTGNNNNCNNNNNNGGTCGGTGTGAGCTGGG
NNTNGGGGTCTNNTTTTNNNNNNNTNNTNNNNNNNNNNNNNNNNNNCNNN
TNNTTNNNNTNTNTTNNNNNNTNTNNNNNTNNTCNNNNNTTCCCAAGAGA
GGGGGGGGGGGGGGCTGGAGCCCTCTNNTTNNNNNNTTTTNTCACCGATG
GGGAGGGGGGGGAGACGCTCTTAGGANNNNNTCCCNCNTTTTGTGGGGGN
TCGTCCTTNNNNNNTGGTNCCTTTCTTGGGTNNNNNAAGCGGAGGAGGGG
TGGT

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXCAGAAAATCACTAAGCAGCCAAGAACATCCTT
AGATTTCCAATCCTTCCGCCTCTGCCCAAGTGCTGGGGTTATAGGTGTGT
ACCACTATACCCAGTTTATGTGGTGCTGTAGTGCTGGGATCCAAACCCAA
GACTTTGTGCATGCTAAGCCAGCACTCCCTCCCAGCCCCCTCTGGGATAA
AGATGTTGCCTGGGTGAATGGGCTGTGGCTGGGTGTGCCTGAGGGGAGGT
GCATGGAAGCACAGCCGTGCCACTTTTGCTGAACAGCTCCTGAAGTCGTG
ACTGTGTGTGAGGGAGAAATGGTTCCTGGGTCCTGAAGATCAGCCTGAGA
ATCCAAGCTGACCCGTCTTCCCCCCCATGACCCTACATCCAGTGTGCTGA
TGATCCTGGCTCCCAGACTAAGGAGGCTCCTGGCTTTAACTCCTCTCAAG
GGACCTAACTCCACCCCTCTGAGCCCTGACCCCGAGCCCTCTCAGTCCTG
ACTCCACCCCTCTGAACCCTGACTCCACCCTGAAGTTCTCAGACCACTCC
AGTCACCAGTTGCTTGGTGACTGAAGACTAGTCCCATGTCCTATATCCTG
AATCACCATCTAGTCCTGACTCTGCCAGCCCCTTCACCATAATTCTCCTC
TCTCTGTCCCTGGCCTTTATGATCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no315_b22.g1 MSMg01no315_b22.g1 CHROMAT_FILE:
MSMg01no315_b22.g1 PHD_FILE: MSMg01no315_b22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:56:30 2005
         (539 letters)



>mm_chr7_51137253_51138192
          Length = 940

 Score =  936 bits (484), Expect = 0.0
 Identities = 526/548 (95%), Gaps = 17/548 (3%)
 Strand = Plus / Plus

                                                                       
Query: 1   taagcagccaagaacatccttagatttccaatccttccgcctctgcccaagtgctggggt 60
           ||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||
Sbjct: 201 taagcagccaagaacatccttagatttccaatccttctgcctctgcctaagtgctggggt 260

                                                                       
Query: 61  tataggtgtgtaccactatacccagtttatgtggtgctgtagtgctgggatccaaaccca 120
           ||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 261 tataggtatgtaccactatacccagtttacgtggtgctgtagtgctgggatccaaaccca 320

                                                                       
Query: 121 agactttgtgcatgctaagccagcactccctcccagccccctctgggataaagatgttgc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agactttgtgcatgctaagccagcactccctcccagccccctctgggataaagatgttgc 380

                                                                       
Query: 181 ctgggtgaatgggctgtggctgggtgtgcctgaggggaggtgcatggaagcacagccgtg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctgggtgaatgggctgtggctgggtgtgcctgaggggaggtgcatggaagcacagccgtg 440

                                                                       
Query: 241 ccactttt----gctgaacagctcctgaagtcgtgactgtgtgtgagggagaaatggttc 296
           ||||        ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ccac----aaaagctgaacagctcctgaagtcgtgactgtgtgtgagggagaaatggttc 496

                                                                       
Query: 297 ctgggtcctgaagatcagcctgagaatccaagctgacccgtcttcc---ccccca--tga 351
           ||||||||||||||||||||||||||||||||||||||||||||||   |    |  |||
Sbjct: 497 ctgggtcctgaagatcagcctgagaatccaagctgacccgtcttcctgac----aaatga 552

                                                                       
Query: 352 ccctacatccagtgtgctgatgatcctggctcccagactaaggaggctcctggctttaac 411
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 ccctacatccagtgtgctgatgatcctggctcccagactaaggaggctcctggctttaac 612

                                                                       
Query: 412 tcctctcaagggacctaactccacccctctgagccctgaccccgagccctctcagtcctg 471
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 613 tcctctcaagggacctaactccacccctctgagccctgacccggagccctctcagtcctg 672

                                                                       
Query: 472 actccacccctctgaaccctgactccaccctgaagttctcagaccactccagtcaccagt 531
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 673 actccacccctctgaaccctgactccaccctgaagttctcagaccactccagtcaccagt 732

                   
Query: 532 tgcttggt 539
           ||||||||
Sbjct: 733 tgcttggt 740


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 539
Length of database: 940
Length adjustment: 10
Effective length of query: 529
Effective length of database: 930
Effective search space:   491970
Effective search space used:   491970
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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