BAC Information

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BAC

Clone NameMSMg01-315F08
Chromosome7 (Build37)
Map Location 114,019,463 - 114,019,656
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100042856, LOC100042047, EG668108, EG668117, Gvin1, LOC672660, LOC100042097, LOC668128, LOC634394, EG209380, EG668139, Gm1966, LOC100042141, Olfr693, Olfr694, Olfr695, Olfr696-ps1, Olfr697, Olfr698, Olfr699, Olfr700, Olfr701, Olfr702, Olfr703, Olfr704, Olfr705
Downstream geneOlfr706, Olfr707, Olfr708, Olfr709-ps1, Olfr710, LOC384651, Olfr6, Olfr711, GA_x5J8B7W6B6J-1784824-1783474, Olfr2, Olfr713, Olfr714, Olfr17, Olfr715, Olfr716, Nlrp14, LOC100042278, 1700012H05Rik, Syt9, Olfml1, Ppfibp2, 5330417H12Rik, Cyb5r2, Ovch2, LOC100042310, Olfr467, Olfr468-ps1, Olfr469, GA_x5J8B7W6B6J-2580381-2580079, Olfr470, Olfr471, LOC626661
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-315F08.T7 (MSMg01no315_f08.b1)MSMg01-315F08.TJ (MSMg01no315_f08.g1)
ACCAG436008AG436009
length720721
length of high quality
(start - end)
570 (43 - 612)194 (129 - 322)
definitionCHROMAT_FILE: MSMg01no315_f08.b1 PHD_FILE: MSMg01no315_f08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:56:46 2005CHROMAT_FILE: MSMg01no315_f08.g1 PHD_FILE: MSMg01no315_f08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:56:46 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTCAGTTTACCCCTATAACCCAGTCTTTGATTGGGTTGTTTGGTGTTTA
GGTGGTTAGAATCATCGGAGCTCTGATATACTCAAGATCACAGTTGAGGT
CACATCTTTTATAACACCTGGTGTAATTGGGGCCTCCACAGGAACCAGGG
AAACACAAACCCCCACCTAACCAGAGGCATGGGTTCCTTACAGCTTCCAC
CAGGGCCCAGAGAAGACCTAGGTCTCTGGCTTCCCACTCACACCTGCAAA
ACCCAGAGAAAGCTTGAATTCCAGGGGCCTGACATGATAGAATCTCAGGG
GCTTGGTCAAACCAGGATCCCACAGCCAGCTTGATTCCCTGGACCTCTGA
CCCACCCAGAATCTCACCACCCAAGAATAACAAGATCTCAGAGACAGCTG
GACTCTGAGGAGTTCTGACACAACTAGGATCACAGGAGGGACAGGCTCCA
GTCAGAAGCAGAAAGAGGCAGGTAGCACTAGAGATACCCATATGGAGAGA
GGCAAGCACATGAACATAAGCAAAAGAAACCAAGACTACTTGACGTCATC
AGAATGCAGTACTCCTACGAGAGCAATCCCTGAATACCCCAACACACCAG
AAAAGATTCTGATTTAAAAACACATCTCATGACTGATGATAGAGGACTTT
AAGAAGGTGAACTGGCTAGN
CCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXAAAATTCCTCAGACTGGACTTCTGATAAAAT
TGTCAGTGCTAACTTTTGCTTTCCCCTGGATATTCCTGGACTTCTAGAGC
CTGATGTGGCCCCAGAATGAATAGGACCCCCAAACAGGACTATCTACTGT
TATTTTGAAGTTCTTTACATGCCTGCTTGACACTAAAAGTTACACAGAGA
AGCTAATTGAAATTAATTTTTTTGGTGTTTTTGTTTTTGTTTTTTGAGAC
AGGGTTTCTCTGTGTAGCCTTGTTTGTCCTGGAACTCACTCTGTAGACCA
GGCTGGCCTTGAACTCAGAAATCTGCCTGCCTCTGCCTCCCAAGTGCTGG
GATTAAAGGTGTGTGCTACCACCCCCTGGCTGTAATTAATTTTTAAAAAT
GACCACACTGAGCACTGATACAGACACTTACACTAAGGTGTTTCCAAAAT
TGTAGCTTTATCTGTTTAAGCTTTTCTGACTATTTCCACACGATCTGGNG
GTGTTTCTATGTTTATCTCACCCCATGCTAAAGCTCTTCTTGTGAGGAAG
AGCTAAGCTGATCTATGTGCGTGTGCGTGTTGAATGTGTGCAGGTCCTTG
CGTATGTTGTTATAGTGTGCTATCTCTTCTGTCATTTGAATACCGCTGCC
TGATGTGGGCTTTGTTTCTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no315_f08.g1 MSMg01no315_f08.g1 CHROMAT_FILE:
MSMg01no315_f08.g1 PHD_FILE: MSMg01no315_f08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:56:46 2005
         (194 letters)



>mm_chr7_114019301_114019894
          Length = 594

 Score =  368 bits (190), Expect = e-106
 Identities = 193/194 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   gatattcctggacttctagagcctgatgtggccccagaatgaataggacccccaaacagg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 356 gatattcctggacttctagagcctgatgtggccccagaatgaataggacccccaaacagg 297

                                                                       
Query: 61  actatctactgttattttgaagttctttacatgcctgcttgacactaaaagttacacaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 296 actatctactgttattttgaagttctttacatgcctgcttgacactaaaagttacacaga 237

                                                                       
Query: 121 gaagctaattgaaattaatttttttggtgtttttgtttttgttttttgagacagggtttc 180
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 236 gaagctaattgaaattaatttgtttggtgtttttgtttttgttttttgagacagggtttc 177

                         
Query: 181 tctgtgtagccttg 194
           ||||||||||||||
Sbjct: 176 tctgtgtagccttg 163


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 194
Length of database: 594
Length adjustment: 8
Effective length of query: 186
Effective length of database: 586
Effective search space:   108996
Effective search space used:   108996
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)