BAC Information

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BAC

Clone NameMSMg01-315G13
Chromosome7 (Build37)
Map Location 134,476,997 - 134,477,316
singlet/doubletsinglet
Overlap geneItgal
Upstream geneLat, 2210013K02Rik, Nfatc2ip, Cd19, Rabep2, Atp2a1, Sh2b1, Tufm, Atxn2l, Eif3s8, Cln3, Apob48r, Il27, Nupr1, Ccdc101, Sult1a1, LOC629029, Giyd2, Bola2, Coro1a, Snrp1c-ps1, LOC100043044, Mapk3, Gdpd3, Ypel3, Tbx6, Ppp4c, Aldoa, 1500016O10Rik, 4930451I11Rik, Doc2a, Ccdc95, Hirip3, 1110032O16Rik, Kctd13, A830007L07Rik, Sez6l2, D830044I16Rik, Cdipt, Mvp, 2900092E17Rik, Maz, Kif22, 1810010M01Rik, AI467606, Qprt, Spn, Cd2bp2, Tbc1d10b, Mylpf, Sept1, LOC100043580, Zfp553, Zfp771, 2410015N17Rik, Sephs2
Downstream geneZfp768, LOC100043097, LOC100043589, 6430604K15Rik, 9130019O22Rik, E430018J23Rik, LOC100043590, Zfp764, Zfp688, Zfp689, Prr14, Fbs1, 1700008J07Rik, LOC100043597, D030022P06Rik, Phkg2, Gm166, Rnf40, 1700120K04Rik, Zfp629, Bcl7c, Ctf1, Ctf2, Fbxl19, Tmem142c, Setd1a, Hsd3b7, Stx1b2, Stx4a, Zfp668, Zfp646, BC039632, Vkorc1, Bckdk, Myst1, Prss8, Prss36, Fus, Pycard, Trim72, LOC436010, EG668675, Itgam, Itgax, Itgad, Cox6a2, LOC100043133, Armc5, Tgfb1i1, Slc5a2, BC017158, EG628781
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-315G13.T7 (MSMg01no315_g13.b1)MSMg01-315G13.TJ (MSMg01no315_g13.g1)
ACCAG436063AG436064
length720716
length of high quality
(start - end)		321 (330 - 650)338 (77 - 414)
definitionCHROMAT_FILE: MSMg01no315_g13.b1 PHD_FILE: MSMg01no315_g13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:56:51 2005CHROMAT_FILE: MSMg01no315_g13.g1 PHD_FILE: MSMg01no315_g13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:56:51 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXGTGCGTATGGAGCCG
CGGAATTCACAGAGTTACAAAAAGACTCTGCCTCCGGAGTGCTGGGATTA
GAGGCGTGCACCACCACACCTGGCCTCACTGCTTCTTAAAAAGAAATATT
TCTGAGAATCAAATATACAGATCTCTTCCTGTCCCTGGAGCAGATGCCAC
CGACTGTGGTGTATCCCGTTTGTCTGCGTAGGATCTCTTTACACCTGGCA
GGTTCAGCTGGTCTGGTCATCTGCCCACTCTCTCTGTGCTTCTGGCAGGT
TGGCTTCTTCAAACGGAATCCGTAGGTTAAGATGGAGGCTGATGGAGGTG
TTCCAAATGGAAGCCCTCCACAACACACTGACCCTCTGGCAGTACCTGGG
GAAGAGACCAAAGATATCCCCCGCCTAGAGCCCCTCCGGGAGAGTGACAA
GGACTAAGGCCTAGGTCTGATACACTGACAGCCCAGGAATAGACTTGAGA
GCCCTGGCTCTGACCAGCTTCAGTCACATGCCACCGTGTATCCTGTCCTT
CACTAGTCATTGCTGTTCCTAGTCCTCAGTTTTCCCATCTCGAGCATAGA
ACTCATTCCTATGTTATCTACAGGTGCCTGGCAAGTAGGCTGATGAAGGT
CATGATTTTCATTGATGAAGCCTGTCTTCTGCTAGCCTGCCTTGTCCCTC
TGAGAGAATCTTTGAAATAN

CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXACAGAGATCTGCCTGCTTCTGCCT
CCCAAGTATTGGAAGTAAAGGCAGTGTGCTACTATGACTGGCTAGGTTTT
TTTGGTTTTTTGAGGCAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAT
CTCACTTTGTAGACCAGGCTGGCCTCAAACTCAGAAATCCGCCTGCCTGT
GTTTTTTTTATCATACATTTATCATACTGGTGCACTAATGTTTGCCAGCA
GGGACTGATGTGCACCACGTGCATGCCTGGTGCCTGAGGAGATCAGAAGA
GGGCAGAGGACCCTCTGGAACAGAAGTTACAGGTTGCTATAAGCCCACAC
GTAGATGCTGGAAGCCCCACCAAAGTCCTCTGTAGGACAAAAAGTACTCT
AAACTACTGGGCCACTTCTCTTCAGCCCAGATTTTCACAACATTTTGTTG
TTTGTTTGGTTTCTGTTTTTCGAGACAGGGTTTCTCTGTATAGCCCTGGC
TGTCCTGGAACTCACTCTGTAGACCAGGCTGGCCTCGAACTCAGAAATCC
ACCTGCCTCTGCCTCCCGAGTGCTGGGATTAAAGGCATGCGCCACCATGC
CCAGCTCACAATATTCTGTTTAAGGCTTTAAAAAATAGTATATGAGTATT
TTACTTGCATGCATAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no315_g13.b1 MSMg01no315_g13.b1 CHROMAT_FILE:
MSMg01no315_g13.b1 PHD_FILE: MSMg01no315_g13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:56:51 2005
         (321 letters)



>mm_chr7_134476797_134477517
          Length = 721

 Score =  565 bits (292), Expect = e-165
 Identities = 313/320 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   agatggaggctgatggaggtgttccaaatggaagccctccacaacacactgaccctctgg 60
           ||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct: 201 agatggaggctgatggaggtgttccaaatggaagccctccagaagacactgaccctctgg 260

                                                                       
Query: 61  cagtacctggggaagagaccaaagatatcccccgcctagagcccctccgggagagtgaca 120
           ||||||||||||||||||||||||||||   | | |||||||||||||||||||||||||
Sbjct: 261 cagtacctggggaagagaccaaagatatgggctgtctagagcccctccgggagagtgaca 320

                                                                       
Query: 121 aggactaaggcctaggtctgatacactgacagcccaggaatagacttgagagccctggct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aggactaaggcctaggtctgatacactgacagcccaggaatagacttgagagccctggct 380

                                                                       
Query: 181 ctgaccagcttcagtcacatgccaccgtgtatcctgtccttcactagtcattgctgttcc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctgaccagcttcagtcacatgccaccgtgtatcctgtccttcactagtcattgctgttcc 440

                                                                       
Query: 241 tagtcctcagttttcccatctcgagcatagaactcattcctatgttatctacaggtgcct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tagtcctcagttttcccatctcgagcatagaactcattcctatgttatctacaggtgcct 500

                               
Query: 301 ggcaagtaggctgatgaagg 320
           ||||||||||||||||||||
Sbjct: 501 ggcaagtaggctgatgaagg 520


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 321
Length of database: 721
Length adjustment: 9
Effective length of query: 312
Effective length of database: 712
Effective search space:   222144
Effective search space used:   222144
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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