BAC Information

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BAC

Clone NameMSMg01-315M21
Chromosome7 (Build37)
Map Location 146,755,417 - 146,755,753
singlet/doubletsinglet
Overlap geneInpp5a
Upstream geneLOC100043290, Mapk1ip1, Ppp2r2d, Bnip3, EG668784, LOC669185, 6330417G02Rik, Dpysl4, Stk32c, LOC100038956, Lrrc27, Pwwp2
Downstream geneNkx6-2, E030019B06Rik, 9330101J02Rik, LOC100043472, EG434253, EG664869, Gpr123, LOC244229, Kndc1, Utf1, LOC100039095, 6430531B16Rik, Adam8, Tubgcp2, Zfp511, Msx3, Drd1ip, Prap1, 1810014F10Rik, Echs1, Paox, Mtg1, Sprn, Olfr522, Olfr523, Olfr524, E430002D04Rik, 5830411N06Rik, EG622335, Olfr525, Olfr527, GA_x5J8B7W72BC-152913-152037, Olfr60, GA_x5J8B7W72BC-125691-125311, Olfr530, LOC622973, Olfr531, Olfr532, Olfr533, Olfr534-ps1, Olfr535, Olfr536, Olfr537-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-315M21.T7 (MSMg01no315_m21.b1)MSMg01-315M21.TJ (MSMg01no315_m21.g1)
ACCAG436343AG436344
length719710
length of high quality
(start - end)
259 (431 - 689)337 (76 - 412)
definitionCHROMAT_FILE: MSMg01no315_m21.b1 PHD_FILE: MSMg01no315_m21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:57:23 2005CHROMAT_FILE: MSMg01no315_m21.g1 PHD_FILE: MSMg01no315_m21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:57:24 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGCGAAGAGGAGC
CGCGGAATTCCACCTCTTCCCAATCAGAATGGTCAAGATCAAAAACTCAG
GTGACAGCAGATGCTGGTGAAGATGTGGAGAAAAAGGAACACCTCTCCAT
TGTTGGTGGGATTGCAAGCTGGTACAACCCCTCTGGAAATCAGTCTGGCG
GTTCCTCAGAAAATTGGACATAGTATAGTACTATCTGAGGACCACTCCTG
GGCATATACCCAAAAGATGTTCCAACATATAACAAGGACACATGCTCCAC
TATGTTCATAGCAGCCTTATTTATAATAGTCAGAAGCTAGAAACAACCCA
GATGTCCCTGAACAGAGGAATAGAAACAGAAAATGTGGTACAATGGAGTA
CTACTCAGCTATTAAAAACACCCACTCCATGAAATTCTTAAGCAAATGAA
TGTAACTAGAAAATATCCTGAGTGAGGTAACCCAATTACAAAAGAACACA
TATGGTATGCACTCATTGATAAGTCAATATTAACCCCAAAACTAAGAATA
CCCAAGGTACAATTCACAGACCACATGAAGCTCAAGAAGAAGGAAGACCA
AAGTGTAGATGCTTTGGTCCTTCTTAGATGGGTGAACAAAATACTCACAG
GAGGAGATACAGAGACAAAGTGTGTAGCAGAGACTGAAGGATAGACCATC
CAGAGACTGCCCCTCCTGG
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXACGTGCCATTCTGACCGAGAAGGTG
ACAATAGCCCCAACTAACAGCCATCCAATGGAAGACCAAATGGAGTGGGA
GCCATCTGCCACCATCCTAGTGTGCACACTGCGCACACGGGAGGCATCTC
TAGGCATGTACATCTTATGGATACTCCCCTTTATCTAGAAACAGCATTCA
GGTTCCCAAGATGGGGGGAAAGGGGGTCGTCCAAACCGAACCGCTACATC
CAGTGTATGGTCAGGTCCACTTTCTGAGATGCCTTTGGCCTCTTCTCCAG
TTATAGCATCTGTGTCATGGGCTTCAACAAAAGGCTCTTGACGCCTGCCT
CACAACTCAGGATGCCCACCACNGTCCTCCACTACCACCTCCTGAGACAC
CGGTGACATCCCTCACTGCCCAGGAAGCACTGATGCTCCTCCTCCATTTG
GCTCCACTGTGTTTTCAAACTGGCAAGCTGAGAGTGGTGGTACATGACTG
TAATCTCAGCTACGTAGGACGATCAGGAAGTGGAGGCCATCCTGGAGTAT
ACATAGAGACCCCGTCTCAAAGCACCTAAAACCACCAAACAATTCATAGT
CCCTGTTGTGTTGCCATGTGTGTTTAGAGAGCCATTCCAGTACAGAAGGA
ATAATCAAGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no315_m21.g1 MSMg01no315_m21.g1 CHROMAT_FILE:
MSMg01no315_m21.g1 PHD_FILE: MSMg01no315_m21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:57:24 2005
         (337 letters)



>mm_chr7_146755217_146755953
          Length = 737

 Score =  621 bits (321), Expect = 0.0
 Identities = 333/337 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   acgtgccattctgaccgagaaggtgacaatagccccaactaacagccatccaatggaaga 60
           |||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||
Sbjct: 201 acgtgccattctgaccgagaaggtgacaatagccccaactaatagccatccagtggaaga 260

                                                                       
Query: 61  ccaaatggagtgggagccatctgccaccatcctagtgtgcacactgcgcacacgggaggc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccaaatggagtgggagccatctgccaccatcctagtgtgcacactgcgcacacgggaggc 320

                                                                       
Query: 121 atctctaggcatgtacatcttatggatactcccctttatctagaaacagcattcaggttc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atctctaggcatgtacatcttatggatactcccctttatctagaaacagcattcaggttc 380

                                                                       
Query: 181 ccaagatggggggaaagggggtcgtccaaaccgaaccgctacatccagtgtatggtcagg 240
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ccaagatggggggaaaaggggtcgtccaaaccgaaccgctacatccagtgtatggtcagg 440

                                                                       
Query: 241 tccactttctgagatgcctttggcctcttctccagttatagcatctgtgtcatgggcttc 300
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tccactttctgagatgtctttggcctcttctccagttatagcatctgtgtcatgggcttc 500

                                                
Query: 301 aacaaaaggctcttgacgcctgcctcacaactcagga 337
           |||||||||||||||||||||||||||||||||||||
Sbjct: 501 aacaaaaggctcttgacgcctgcctcacaactcagga 537


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 337
Length of database: 737
Length adjustment: 9
Effective length of query: 328
Effective length of database: 728
Effective search space:   238784
Effective search space used:   238784
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)