Query= MSMg01no315_n21.b1 MSMg01no315_n21.b1 CHROMAT_FILE:
MSMg01no315_n21.b1 PHD_FILE: MSMg01no315_n21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:57:28 2005
(571 letters)
>mm_chr7_106808508_106809478
Length = 971
Score = 953 bits (493), Expect = 0.0
Identities = 517/525 (98%)
Strand = Plus / Minus
Query: 47 gcctctgcctctcaatcactgggattacaggcgcgtgccactaaaccctggatacttcct 106
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct: 971 gcctctgcctctcaatcactgggattacaggcgtgtgccactaaaccctggatactttct 912
Query: 107 ttttttttttgagtcatgacctcattttatgcccatgctgttcttgatctcactagagca 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 911 ttttttttttgagtcatgacctcattttatgcccatgctgttcttgatctcactagagca 852
Query: 167 gccaggctgaccttgaacccacaacagtcctcccacctcagccttttaagtgctgggatt 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 851 gccaggctgaccttgaacccacaacagtcctcccacctcagccttttaagtgctgggatt 792
Query: 227 tcccacatatgcatccatgctggatagctccccaatgaggaaaatgacagttaatgaaag 286
||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 791 tcccacatacgcatccatgctggatagctccccaatgaggaaaatgacagttaaagaaag 732
Query: 287 agaccccaggctcttataaatgacagagccatatctctcctctaagctatcagtcagcag 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 731 agaccccaggctcttataaatgacagagccatatctctcctctaagctatcagtcagcag 672
Query: 347 acagtccttaccctccccctggggctcaccccccctatctgtacaatggagagctcagag 406
|||||||||||||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct: 671 acagtccttaccctccccctggggctcagtcttcctatctgtacaatggagagctcagag 612
Query: 407 gagctcaaaggcaggaatggataacataggctaggtagatgtagaaggacttgaaacaag 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 611 gagctcaaaggcaggaatggataacataggctaggtagatgtagaaggacttgaaacaag 552
Query: 467 acaagagccagctggggagtggctgcctctgtctctgagccacaggacacagttcctgca 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 acaagagccagctggggagtggctgcctctgtctctgagccacaggacacagttcctgca 492
Query: 527 gtctgggactgtctagggaggcttctctgcaaaggaaaagccaaa 571
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 gtctgggactgtctagggaggcttctctgcaaaggaaaagccaaa 447
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 571
Length of database: 971
Length adjustment: 10
Effective length of query: 561
Effective length of database: 961
Effective search space: 539121
Effective search space used: 539121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no315_n21.g1 MSMg01no315_n21.g1 CHROMAT_FILE:
MSMg01no315_n21.g1 PHD_FILE: MSMg01no315_n21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:57:28 2005
(588 letters)
>mm_chr7_106637976_106638963
Length = 988
Score = 1019 bits (527), Expect = 0.0
Identities = 574/599 (95%), Gaps = 17/599 (2%)
Strand = Plus / Plus
Query: 1 ctgggatctcttcttggtctagacaagccactatagaagaaccaaggaatatgaccaagg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctgggatctcttcttggtctagacaagccactatagaagaaccaaggaatatgaccaagg 260
Query: 61 ggaatccgggactgtccactgagtcctggagctggagagatgagaccgcccgagcccttc 120
|||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggaatctgggactgtccgctgagtcctggagctggagagatgagaccgcccgagcccttc 320
Query: 121 cccactcctcttttctcttatgaatcgatgtttggcaagctcagagaatgaataaaggta 180
|||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||
Sbjct: 321 cccactcctcttttctcttatgaatcaatgtttggctagctcagagaatgaataaaggta 380
Query: 181 aattcagtgatgtcagcctcttggccttattcagttttccagaaccaaattggcaggaag 240
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aattcagtgatgtcagccccttggccttattcagttttccagaaccaaattggcaggaag 440
Query: 241 ccagggcacacagtcaatttatatccttggatttaaatggatttggtttaatagatatgg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ccagggcacacagtcaatttatatccttggatttaaatggatttggtttaatagatatgg 500
Query: 301 atttaaaccttgcctggggccatcaggaatgccttccaaagggctacccccc------ac 354
|||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 501 atttaaaccttgcctggggccatcaggaatgccttccaaagggcta------ggtggaac 554
Query: 355 atggcgataaactctgggactggtcgattaggagctcaaggtcattctgggctatgcagt 414
|||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 555 atggcgataaaccctgggacaggtcgattaggagctcaaggtcattctgggctatgcagt 614
Query: 415 gagtttaagaacagcctcaaaaaaagggggggggg-----acgactggagagatggctca 469
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 615 gagtttaagaacagcctcaaaaaaaggggggggggggacgacgactggagagatggctca 674
Query: 470 gtggttaagagcactggctgcttttcctaaggtcctgagtcacaaccatctgtaatggga 529
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 675 gtggttaagagcactggctgcttttcctaaggtcctgagtcacaaccatctgtaatggga 734
Query: 530 tttgatgccctgttctggtgtgtctgaagacagctacagtatactcatataaataaaaa 588
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 735 tttgatgccctgttctggtgtgtctgaagacagctaaagtatactcatataaataaaaa 793
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 588
Length of database: 988
Length adjustment: 10
Effective length of query: 578
Effective length of database: 978
Effective search space: 565284
Effective search space used: 565284
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
