BAC Information

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BAC

Clone NameMSMg01-315P13
Chromosome7 (Build37)
Map Location 53,070,558 - 53,226,238
singlet/doubletdoublet
Overlap geneKcnj14, Grwd1, Grin2d, Kdelr1, Syngr4, Tmem143, Emp3, BC013491, LOC677321
Upstream geneAtf5, Nup62, Il4i1, Tbc1d17, Akt1s1, Pnkp, Ptov1, Med25, Fuz, Ap2a1, Stk22s1, Cpt1c, Prmt1, Bcl2l12, Irf3, AI480556, Rras, Prr12, Prrg2, Nosip, Rcn3, Fcgrt, Rps11, Rnu35b, Rpl13a, Rnu35a, Rnu34, Rnu33, Rnu32, Flt3l, Aldh16a1, Pih1d1, Slc17a7, Gm581, LOC100039953, Tifp39, BC050196, Dkkl1, Tead2, Cd37, Slc6a16, 1700039E15Rik, Trpm4, LOC100040970, Hrc, 2410127E16Rik, Mtag2, Lin7b, Snrp70, Kcna7, Ntf5, LOC100040019, Lhb, Ruvbl2, Gys1, Ftl1, Bax, Dhdh, Nucb1, Tulp2, Myd116, Plekha4, Hsd17b14, Bcat2, Fgf21, Fut1, Izumo1, Rasip1, 5430432N15Rik, Fut2, Sec1, Gm484, Car11, Dbp, Sphk2, Rpl18, 4930403C10Rik, Spaca4, Sult2b1, EG545963, Lmtk3, Pscd2
Downstream geneAbcc6, Nomo1, Kcnj11, Abcc8, Ush1c, Otog, Myod1, Kcnc1, Sergef, Tph1, Saal1, Saa3, Saa4, LOC100040106, Saa1, Saa2, Hps5, Gtf2h1, EG668838, EG384622, Ldha, Ldhc, Tsg101, Uevld, C86187
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-315P13.T7 (MSMg01no315_p13.b1)MSMg01-315P13.TJ (MSMg01no315_p13.g1)
ACCAG436456AG436457
length734740
length of high quality
(start - end)		376 (36 - 411)344 (77 - 420)
definitionCHROMAT_FILE: MSMg01no315_p13.b1 PHD_FILE: MSMg01no315_p13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:57:36 2005CHROMAT_FILE: MSMg01no315_p13.g1 PHD_FILE: MSMg01no315_p13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:57:36 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(53,225,873 - 53,226,238)(53,070,558 - 53,070,901)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCACCT
GCTCTACTCGTAAATGCACAGCACTTTACACGATGGCAGCAGCACATCGG
CTTTTGAAGGATTCCCTATGTCGTTTTCATGATAGATGCATGATAGAGAT
GATGCTCTAACAGTCCATCCACATCCATCCACCCACAGTCTATCCTTCTG
TGCTCCTGTCTAGAACGTCAGTGAGCACCAAGAGTCTACATCCAAGAGTC
CTGCAGTAGTATTACACTGGAGTCCATTTCTGTAATACAAGTTGCACTCG
GAAATCCATGACTGGCTACAGAGGAACATGCAAGAATACTCCTGTTTTAC
TGAGTCCATGTGTGCTCAGTTGGATTTCCACATGTGCTGCACTAGTATCT
GTTGTAGCCCCCCCTCCATATCAGGGACATCCATGTGTTCTGATAGGCTG
TTAGGACGTGTACATATGACTCCTCGAGTGCACCCCTCTGCTCCTGAACA
AGAGCCTTGGTGTCCAGGTGCAGTGCTGCATTCTGATAAATCTATGATCA
CTTCTGCTGCAGGCATTTGTGGTGCATTTGTGGCATAACTGTGCTTGCAG
TTGTATGGTAAATCCCATTTGCACGGTGTGCTGCTCCATCTCCCTTCAGC
CCTGTAATACTATACAATGTGTGCTGCTGTCCTCGTTCAGGCTTGCGTGG
AGTTGTGCCTGTCCAGCCATCTGCTGTGTTGTAN

NCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXACCCTGTAGACCAGGCTGCCCTCG
AACTCAGAAGTCCTCCTACTTCTGCCTCCTAAATGCTGGGATTAAAAGGC
GTGCGCTACCACTGCTCGGCTCACTGCTCTTCTTAAACTCATTCCTCCAC
ACATTATTCTCCTCTTTACAGGGAAAGCAGTGAGGGGCCTGTGTGATGGG
GAACTCCGGCACACTTGTAAATCCCAGGCCCATGATGGGGCTTCCAGGTC
TTGTCCTCATTTGTGTCCCTGAGCTGCTCAGGTGGGGGCGGATTCTGGGC
CAGGACTTGGGTAAGCCTCTGGATTAGTCACGGAGCCTCCTAATCCCCTC
TGTGACCTTTACGACTGGCGCCCCCCATGCCCTCTCTTCTGGAGACCCTG
GGTACACCAGTTCTACCCAGTTCTCTCTTTTCATTAGAATCCCATGTCCC
TGCCTGTTCAGCCCAACCAACTTAGCATCCTTCTCCGCCATGGTCTCCTT
TGTTCCCAGTCCCTGCCCTGGACTTGGAGGTGGGAGAGCTGCCAGCTAAT
TAATCCTGTCCGGTTATTACCTGGGGATTCTGAAGGATAAAGCAAGATGA
GAACCAGAGGAGGGCATGCGTGGACTCAGCACTCAGGCAAGCCAGTGCCA
GCGATGGTGCTGGCTCCCAGTACGGAACATGAGTGAGGAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no315_p13.b1 MSMg01no315_p13.b1 CHROMAT_FILE:
MSMg01no315_p13.b1 PHD_FILE: MSMg01no315_p13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:57:36 2005
         (376 letters)



>mm_chr7_53225556_53226333
          Length = 778

 Score =  619 bits (320), Expect = 0.0
 Identities = 357/374 (95%), Gaps = 12/374 (3%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccacctgctctactcgtaaatgcacagcactttacacgatggcagcagcacatcg 64
           ||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 gaattccacctgctcta-ttgtaaatgcacagcactttacacgatggcagcagcacatcg 625

                                                                       
Query: 65  gcttttgaaggattccctatgtcgttttcatgatagatgcatgatagagatg-a-tgctc 122
           ||||||||||||||||||||||||||||||||||||||||||||       | | |||||
Sbjct: 624 gcttttgaaggattccctatgtcgttttcatgatagatgcatga-------gcactgctc 572

                                                                       
Query: 123 taacagtccatccacatccatccacccacagtctatccttctgtgctcctgtctagaacg 182
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 571 taacagtccatccacattcatccacccacagtctatccttctgtgctcctgtctagaacg 512

                                                                       
Query: 183 tcagtgagcaccaagagtctacatccaagagtcctgcagtagtattacactggagtccat 242
           ||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||
Sbjct: 511 tcagtgagcaccaagagtctacatcctcgagtcctgcagtagtattacactggagtccat 452

                                                                       
Query: 243 ttctgtaatacaagttgcactcggaaatccatgactg--gctacagaggaacatgcaaga 300
           ||||||||||||||||||||| |||||||||||||||  |||||||||||||||||||||
Sbjct: 451 ttctgtaatacaagttgcacttggaaatccatgactgtggctacagaggaacatgcaaga 392

                                                                       
Query: 301 atactcctgttttactgagtccatgtgtgctcagttggatttccacatgtgctgcactag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 atactcctgttttactgagtccatgtgtgctcagttggatttccacatgtgctgcactag 332

                         
Query: 361 tatctgttgtagcc 374
           ||||||||||||||
Sbjct: 331 tatctgttgtagcc 318


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 376
Length of database: 778
Length adjustment: 9
Effective length of query: 367
Effective length of database: 769
Effective search space:   282223
Effective search space used:   282223
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no315_p13.g1 MSMg01no315_p13.g1 CHROMAT_FILE:
MSMg01no315_p13.g1 PHD_FILE: MSMg01no315_p13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:57:36 2005
         (344 letters)



>mm_chr7_53070358_53071101
          Length = 744

 Score =  665 bits (344), Expect = 0.0
 Identities = 344/344 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   accctgtagaccaggctgccctcgaactcagaagtcctcctacttctgcctcctaaatgc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 accctgtagaccaggctgccctcgaactcagaagtcctcctacttctgcctcctaaatgc 260

                                                                       
Query: 61  tgggattaaaaggcgtgcgctaccactgctcggctcactgctcttcttaaactcattcct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgggattaaaaggcgtgcgctaccactgctcggctcactgctcttcttaaactcattcct 320

                                                                       
Query: 121 ccacacattattctcctctttacagggaaagcagtgaggggcctgtgtgatggggaactc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccacacattattctcctctttacagggaaagcagtgaggggcctgtgtgatggggaactc 380

                                                                       
Query: 181 cggcacacttgtaaatcccaggcccatgatggggcttccaggtcttgtcctcatttgtgt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cggcacacttgtaaatcccaggcccatgatggggcttccaggtcttgtcctcatttgtgt 440

                                                                       
Query: 241 ccctgagctgctcaggtgggggcggattctgggccaggacttgggtaagcctctggatta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ccctgagctgctcaggtgggggcggattctgggccaggacttgggtaagcctctggatta 500

                                                       
Query: 301 gtcacggagcctcctaatcccctctgtgacctttacgactggcg 344
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gtcacggagcctcctaatcccctctgtgacctttacgactggcg 544


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 344
Length of database: 744
Length adjustment: 9
Effective length of query: 335
Effective length of database: 735
Effective search space:   246225
Effective search space used:   246225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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