BAC Information

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BAC

Clone NameMSMg01-316G22
Chromosome7 (Build37)
Map Location 144,658,062 - 144,658,429
singlet/doubletsinglet
Overlap geneTxnl2
Upstream geneLOC546009, EG621677, EG668771, Mgmt, EG621804, Ebf3, 9430038I01Rik
Downstream geneLOC435235, Tcerg1l
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-316G22.T7 (MSMg01no316_g22.b1)MSMg01-316G22.TJ (MSMg01no316_g22.g1)
ACCAG436778AG436779
length743748
length of high quality
(start - end)
370 (42 - 411)240 (77 - 316)
definitionCHROMAT_FILE: MSMg01no316_g22.b1 PHD_FILE: MSMg01no316_g22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:58:10 2005CHROMAT_FILE: MSMg01no316_g22.g1 PHD_FILE: MSMg01no316_g22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:58:11 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGCGAATCCGCGGAATTCTTC
CTCCGTATTATCCCCACCCACTTCCCACCATAGCTTAGCTGTAAATCTGT
GACGCAGCAGAGTGCTCGCTTGTGTAGGAAGACCGTGAAAGACCCGATGC
TACTGAAGTCTACCTAATTGATGAGTTACGGCTGCCTGGGCCTAGTGCTT
TTGTGGTCACTGATCTATCTACTGGTTTAGAACCCTTTTAACTTTGTCCT
GACATTGTTTGCCAGCTCTTCCTCCCATTTGTGAGTTCTGTATTTGCAGA
TTCAACCACTGAAGATAAAATTTATATGTTTATGTGTTTTAATTTATAGA
AGCAAGACTTGGGAGTATGTACATGCCTTTAATCCCAACATTTGACACAC
AAAGGCAGGAAGATTTCCCCCACGTTGGCTGCTTAGTGAGTTCTAGGACA
CCCAGAGATTCCATATCAAAACAATGTTTTTTAGTCTGTAGTGACATGGA
GTGAGAGGTCCCTGCAGGTGTTACGTCAGGAGGAGAAACAAACCCGGAGA
GGGAGAATGAGACTTTCGTCAGCCTGGCTCAAACTGCGGGAATCTGACGC
CAGGCAGTTTATGGCCAACATAGTTAATCCCAATATAAATTAGAAAACAG
TTTCCCAATACTATATAATTCCCAGAGCAAAAGAAACTCAACTCAAAGTC
CATGAGGTTTCTTCCAGCTGGATAGGTTATAGACATAGCAACN
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXTGCCAAAAACAACTTTGTGAAGGGATCTGCAGCAAT
GATGGGTGGTGATCAGGGCATAGCCCAACACCCTACATGCATGCACACAC
ACACACACACACACACACACACACACATGTACACACACATATACACACGT
ACACACACATGCATATACATATGGACACACACATGCACACATGTACACAC
ACATGCATACACACACATGACACAGTTGTATCATGTGATGTTTTTCTGGA
AACTGTCTTATGAGAGGCTGTTTGTCTTAAACAGACACACGAGAGGATGT
TTTATTGAGAACAGACACGTGGTGTTTCTCTAGAAGTTGTCTGAAAAGGG
AGTATGTGATGGTTTGTTGCCACCCCCACACTTGAGAGAACATAACCCAA
CAGACAGTGGACGATGTTGTGGCATTGGTTCATCTTACCACTCTTTGCTG
ATCTTTGTTTGCTGTGATTTTGTAAAGAGAAACACACCAAAGAAGTTCTC
ATGGTATTTGCGCGGCTTCCATGGACTTGGACCCATTGGCAGAGCCGTTT
TTCTTCTGAGTTGACCTGCCATTGCCGATCCGCGAATAGTGCTTGTGACT
GGATCCAGCTACTATTGCTGATCCATGCGACCTGAACTGCTGCTATCCTG
ACCATGAAGATTGCAGTCATCCAAAATAACTCTTTCTAAATACGTCCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no316_g22.b1 MSMg01no316_g22.b1 CHROMAT_FILE:
MSMg01no316_g22.b1 PHD_FILE: MSMg01no316_g22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:58:10 2005
         (370 letters)



>mm_chr7_144657860_144658629
          Length = 770

 Score =  652 bits (337), Expect = 0.0
 Identities = 361/373 (96%), Gaps = 8/373 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   gaattcttcctccgta---ttatccccacccacttcccaccatagcttagctgtaaatct 57
           ||||||||||||||||   ||     ||||||||||||||||||||||||||||||||||
Sbjct: 203 gaattcttcctccgtagagtt-----cacccacttcccaccatagcttagctgtaaatct 257

                                                                       
Query: 58  gtgacgcagcagagtgctcgcttgtgtaggaagaccgtgaaagacccgatgctactgaag 117
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 gtgacgcagcagagtgctcgcttgtgtaggaagaccgtgaaagacccgatgctactgaag 317

                                                                       
Query: 118 tctacctaattgatgagttacggctgcctgggcctagtgcttttgtggtcactgatctat 177
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 tctacctgattgatgagttacggctgcctgggcctagtgcttttgtggtcactgatctat 377

                                                                       
Query: 178 ctactggtttagaacccttttaactttgtcctgacattgtttgccagctcttcctcccat 237
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 ctactggtttagaacccttttaactttgtcctgacattgtttgccagctcttcctcccat 437

                                                                       
Query: 238 ttgtgagttctgtatttgcagattcaaccactgaagataaaatttatatgtttatgtgtt 297
           ||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||
Sbjct: 438 ttgtgagttctgtatttgcagattcaaccactgaagataaaaaaaatatgtttatgtgtt 497

                                                                       
Query: 298 ttaatttatagaagcaagacttgggagtatgtacatgcctttaatcccaacatttgacac 357
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 ttaatttatagaagcaagacttgggagtatgtacatgcctttaatcccaacatttgacac 557

                        
Query: 358 acaaaggcaggaa 370
           |||||||||||||
Sbjct: 558 acaaaggcaggaa 570


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 370
Length of database: 770
Length adjustment: 9
Effective length of query: 361
Effective length of database: 761
Effective search space:   274721
Effective search space used:   274721
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)