BAC Information

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BAC

Clone NameMSMg01-316I17
Chromosome7 (Build37)
Map Location 147,807,237 - 147,807,524
singlet/doubletsinglet
Overlap genenone
Upstream geneE030019B06Rik, 9330101J02Rik, LOC100043472, EG434253, EG664869, Gpr123, LOC244229, Kndc1, Utf1, LOC100039095, 6430531B16Rik, Adam8, Tubgcp2, Zfp511, Msx3, Drd1ip, Prap1, 1810014F10Rik, Echs1, Paox, Mtg1, Sprn, Olfr522, Olfr523, Olfr524, E430002D04Rik, 5830411N06Rik, EG622335, Olfr525, Olfr527, GA_x5J8B7W72BC-152913-152037, Olfr60, GA_x5J8B7W72BC-125691-125311, Olfr530, LOC622973, Olfr531, Olfr532, Olfr533, Olfr534-ps1, Olfr535, Olfr536, Olfr537-ps1, Olfr1523-ps1, Olfr538, Olfr1553-ps1, Olfr46
Downstream geneOlfr61, Olfr53, Olfr539, GA_x5J8B7W3EKE-4574231-4574913, Olfr45, Olfr541, GA_x5J8B7W3EKE-4522784-4521912, Cyp2e1, Syce1, LOC100043529, BC066028, 1190003J15Rik, Scgb1c1, Odf3, Bet1l, Ric8, Sirt3, Psmd13, LOC100043546, Cox8b, Nlrp6, Athl1, Ifitm5, Ifitm2, Ifitm1, LOC665143, Ifitm3, Ifitm6, B4galnt4, Pkp3, Sigirr, Trp53i5, Ptdss2, Rnh1, LOC546015, Hras1, Lrrc56, 1600016N20Rik, Rassf7, AA673488, Irf7, Mucdhl, Sct, Drd4, Deaf1, Tmem80, Eps8l2, B230206H07Rik, Taldo1, LOC100043585, Pddc1, Cend1, Slc25a22, Lrdd, Rplp2, Pnpla2, Efcab4a, Cd151, Polr2l, Tspan4, Chid1, Ap2a2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-316I17.T7 (MSMg01no316_i17.b1)MSMg01-316I17.TJ (MSMg01no316_i17.g1)
ACCAG436862AG436863
length746758
length of high quality
(start - end)		579 (38 - 616)288 (77 - 364)
definitionCHROMAT_FILE: MSMg01no316_i17.b1 PHD_FILE: MSMg01no316_i17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:58:19 2005CHROMAT_FILE: MSMg01no316_i17.g1 PHD_FILE: MSMg01no316_i17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:58:19 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTT
GTTCTCCTCTGAGCCCCATTTTTAATGGGGTTATTTGATTTTCTGGAGTC
CAACTTCTTGAGTTCTTTATATATATTGGATATTAGTCCCCTATCTGATT
TAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTAGTCTTTTTGTCTTA
TTGATGGTGTCTTTTGCTTTGCAGAAGCTTTGGAGTTTCATGAGGTCCCA
TTTGTCAATTTTCGATCTTAGAGCACAAGCCATTGCTGTTCTATTCAGGA
ATTTTTCCGCTGTGCCCATTTCTTCAAGACTTTTCCCAACTTTCTCCTCT
ATAAGTTTCAGTGTCTCTGGTTTTATGTGAAGTTCCTTGTTCAACTTAGA
TTTGACCCCACTACAAGGAGATAGGTATGGATCGATTCGCATTCTTCTAC
ATGATAACAACCAGTTGTGCCAGCACCATTTGTTGAAAATGCTGTCTTTT
TCTTTTTTTTTTCCATTTTTATTAGGTATTTAGCTCATTTACATTTCCAA
TGCTATACCAAAAGTCCCCCATATCCACCCACCCCCACTCCTTTGCCCAC
CCACTCCCCCTTTTTGGCACTGGTGTTCCCCTGTATTGGGGCATACTAAG
CTTGCAAGTCTAATGGGCCTCTCTTTCCAGTGATGGCCAACTATGGCATC
CCTTGATATATATGCAGTTAGAGTCAAGAGCTCCCGGGTTATGGTT

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTAAATATTGTATTTATGAGATGT
ATTTATGTAGATGTGTATGTGACCATTTGTATACTTAGTGTTTGGCTGAT
TATCAGTGGTTCTATAAGTTACAGTCATGAGACTAATAACAGAAGAAGTG
CACAGAACATGGCTTAAAGATGAAGCAACCAGTGTGAAAAAAACCAAATG
ATTCACAGATGGTACTCATTATAGTTACCATAACTGAATTAAAAATCACC
TAGGAGATCCCCGAGGGTCTCTTTTGTCCATGCCAGTGAGAGTGTTTCCA
GAAAGGAATCACTGATGCAGGCATCCACTCTATGTGGGTAACATGATCCT
AGGGCACTAGAAAGCCCCCCCTAAAGGGAAAAGGAGAAAGCCTCCTTTTT
TTTTTTAATTTCATTTTTTATTACATATTTTCTTCATTTACATTTCAAAT
GCTATCCTGAAAGTCCCCTATACCGTCTCCCTTCCTTGATCCCCAACCCA
CCCACTTTGCTTCCTGGTCCTGGCATTCCCCTGTACTGGGACATATGATC
TTCACAATACCAAGGGCCTCTCTTCCCATTGATGGCTGACTATGCCCTCC
TCTACTACATATGCAACTAGAGACATTATTCTGGTGGGTACCGGCCAGTT
TCTATTGTCGACCCTCTTAAAGGTTTGCACACCCTTTTTGCTCCTTGTGT
ATTTTCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no316_i17.g1 MSMg01no316_i17.g1 CHROMAT_FILE:
MSMg01no316_i17.g1 PHD_FILE: MSMg01no316_i17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:58:19 2005
         (288 letters)



>mm_chr7_147807144_147807831
          Length = 688

 Score =  503 bits (260), Expect = e-147
 Identities = 281/288 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctaaatattgtatttatgagatgtatttatgtagatgtgtatgtgaccatttgtatactt 60
           ||||||||||||||||||||||||||  ||||||||||||||||||| ||||||||||||
Sbjct: 381 ctaaatattgtatttatgagatgtatgcatgtagatgtgtatgtgactatttgtatactt 322

                                                                       
Query: 61  agtgtttggctgattatcagtggttctataagttacagtcatgagactaataacagaaga 120
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agtgtttggctgattatcagttgttctataagttacagtcatgagactaataacagaaga 262

                                                                       
Query: 121 agtgcacagaacatggcttaaagatgaagcaaccagtgtgaaaaaaaccaaatgattcac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 261 agtgcacagaacatggcttaaagatgaagcaaccagtgtgaaaaaaaccaaattattcac 202

                                                                       
Query: 181 agatggtactcattatagttaccataactgaattaaaaatcacctaggagatccccgagg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 201 agatggtactcattatagttaccataactgaattaaaaatcacctaggagatcccagagg 142

                                                           
Query: 241 gtctcttttgtccatgccagtgagagtgtttccagaaaggaatcactg 288
           ||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 141 gtcgcttttgtccatgccagtgagagtgtttccagaaaggaatcactg 94


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 688
Length adjustment: 9
Effective length of query: 279
Effective length of database: 679
Effective search space:   189441
Effective search space used:   189441
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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